Strain Fitness in Pseudomonas putida KT2440 around PP_0396

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0395 and PP_0396 overlap by 4 nucleotidesPP_0396 and PP_0397 are separated by 155 nucleotides PP_0395: PP_0395 - putative type IV piliation protein, at 479,524 to 481,092 _0395 PP_0396: PP_0396 - conserved protein of unknown function, at 481,089 to 482,360 _0396 PP_0397: PP_0397 - protein kinase, at 482,516 to 484,438 _0397 Position (kb) 481 482 483Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 480.116 kb on + strand, within PP_0395at 480.116 kb on + strand, within PP_0395at 480.117 kb on - strand, within PP_0395at 480.119 kb on + strand, within PP_0395at 480.209 kb on + strand, within PP_0395at 480.209 kb on + strand, within PP_0395at 480.230 kb on + strand, within PP_0395at 480.285 kb on - strand, within PP_0395at 480.291 kb on - strand, within PP_0395at 480.291 kb on - strand, within PP_0395at 480.291 kb on - strand, within PP_0395at 480.319 kb on + strand, within PP_0395at 480.319 kb on + strandat 480.319 kb on + strand, within PP_0395at 480.320 kb on - strand, within PP_0395at 480.320 kb on - strand, within PP_0395at 480.320 kb on - strand, within PP_0395at 480.369 kb on - strand, within PP_0395at 480.369 kb on - strand, within PP_0395at 480.525 kb on + strand, within PP_0395at 480.526 kb on - strand, within PP_0395at 480.526 kb on - strand, within PP_0395at 480.526 kb on - strand, within PP_0395at 480.542 kb on + strand, within PP_0395at 480.543 kb on - strand, within PP_0395at 480.543 kb on - strand, within PP_0395at 480.543 kb on - strand, within PP_0395at 480.557 kb on + strand, within PP_0395at 480.557 kb on + strand, within PP_0395at 480.557 kb on + strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.635 kb on + strand, within PP_0395at 480.636 kb on - strand, within PP_0395at 480.636 kb on - strand, within PP_0395at 480.636 kb on - strand, within PP_0395at 480.698 kb on + strand, within PP_0395at 480.698 kb on + strand, within PP_0395at 480.699 kb on - strand, within PP_0395at 480.699 kb on - strand, within PP_0395at 480.720 kb on + strand, within PP_0395at 480.728 kb on + strand, within PP_0395at 480.728 kb on + strand, within PP_0395at 480.728 kb on + strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.821 kb on + strand, within PP_0395at 480.848 kb on + strand, within PP_0395at 480.848 kb on + strand, within PP_0395at 480.849 kb on - strand, within PP_0395at 480.881 kb on + strand, within PP_0395at 480.923 kb on + strand, within PP_0395at 480.924 kb on - strand, within PP_0395at 480.924 kb on - strand, within PP_0395at 481.020 kb on - strandat 481.020 kb on - strandat 481.020 kb on - strandat 481.098 kb on + strandat 481.136 kb on + strandat 481.137 kb on - strandat 481.137 kb on - strandat 481.201 kb on + strandat 481.201 kb on + strandat 481.202 kb on - strandat 481.246 kb on + strand, within PP_0396at 481.246 kb on + strand, within PP_0396at 481.246 kb on + strand, within PP_0396at 481.246 kb on + strand, within PP_0396at 481.247 kb on - strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.256 kb on - strand, within PP_0396at 481.256 kb on - strand, within PP_0396at 481.256 kb on - strand, within PP_0396at 481.348 kb on + strand, within PP_0396at 481.348 kb on + strand, within PP_0396at 481.348 kb on + strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strandat 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.404 kb on + strand, within PP_0396at 481.405 kb on - strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.520 kb on + strand, within PP_0396at 481.521 kb on - strand, within PP_0396at 481.521 kb on - strand, within PP_0396at 481.537 kb on + strand, within PP_0396at 481.537 kb on + strand, within PP_0396at 481.538 kb on - strand, within PP_0396at 481.596 kb on + strand, within PP_0396at 481.597 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.871 kb on + strand, within PP_0396at 481.872 kb on - strand, within PP_0396at 481.965 kb on + strand, within PP_0396at 482.201 kb on + strand, within PP_0396at 482.228 kb on - strand, within PP_0396at 482.273 kb on + strandat 482.274 kb on - strandat 482.347 kb on - strandat 482.347 kb on - strandat 482.349 kb on - strandat 482.353 kb on + strandat 482.353 kb on + strandat 482.354 kb on - strandat 482.504 kb on + strandat 482.505 kb on - strandat 482.518 kb on - strandat 482.578 kb on - strandat 482.722 kb on - strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.926 kb on - strand, within PP_0397at 482.926 kb on - strand, within PP_0397at 482.934 kb on + strand, within PP_0397at 482.934 kb on + strand, within PP_0397at 482.934 kb on + strandat 482.934 kb on + strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.968 kb on - strand, within PP_0397at 482.979 kb on + strand, within PP_0397at 482.980 kb on - strand, within PP_0397at 483.015 kb on + strand, within PP_0397at 483.016 kb on - strand, within PP_0397at 483.016 kb on - strand, within PP_0397at 483.016 kb on - strand, within PP_0397at 483.030 kb on + strand, within PP_0397at 483.030 kb on + strand, within PP_0397at 483.051 kb on + strand, within PP_0397at 483.052 kb on - strand, within PP_0397at 483.108 kb on + strand, within PP_0397at 483.108 kb on + strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.234 kb on + strand, within PP_0397at 483.307 kb on - strand, within PP_0397at 483.310 kb on + strand, within PP_0397at 483.311 kb on - strand, within PP_0397

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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480,116 + PP_0395 0.38 -2.5
480,116 + PP_0395 0.38 -1.2
480,117 - PP_0395 0.38 -2.2
480,119 + PP_0395 0.38 -1.4
480,209 + PP_0395 0.44 -1.3
480,209 + PP_0395 0.44 -1.6
480,230 + PP_0395 0.45 -2.8
480,285 - PP_0395 0.49 -3.8
480,291 - PP_0395 0.49 -2.3
480,291 - PP_0395 0.49 -2.8
480,291 - PP_0395 0.49 -2.7
480,319 + PP_0395 0.51 -1.5
480,319 + +1.1
480,319 + PP_0395 0.51 -3.1
480,320 - PP_0395 0.51 -2.4
480,320 - PP_0395 0.51 -3.7
480,320 - PP_0395 0.51 -3.2
480,369 - PP_0395 0.54 -2.6
480,369 - PP_0395 0.54 +0.2
480,525 + PP_0395 0.64 -3.4
480,526 - PP_0395 0.64 -4.2
480,526 - PP_0395 0.64 -1.9
480,526 - PP_0395 0.64 -2.9
480,542 + PP_0395 0.65 -3.0
480,543 - PP_0395 0.65 -1.9
480,543 - PP_0395 0.65 -0.1
480,543 - PP_0395 0.65 -3.5
480,557 + PP_0395 0.66 -3.7
480,557 + PP_0395 0.66 -3.7
480,557 + PP_0395 0.66 -3.0
480,558 - PP_0395 0.66 -3.4
480,558 - PP_0395 0.66 -2.8
480,558 - PP_0395 0.66 -3.0
480,558 - PP_0395 0.66 -3.9
480,635 + PP_0395 0.71 -3.1
480,636 - PP_0395 0.71 -2.2
480,636 - PP_0395 0.71 -2.7
480,636 - PP_0395 0.71 -3.2
480,698 + PP_0395 0.75 -4.0
480,698 + PP_0395 0.75 -3.9
480,699 - PP_0395 0.75 -2.9
480,699 - PP_0395 0.75 -1.8
480,720 + PP_0395 0.76 -2.4
480,728 + PP_0395 0.77 -0.4
480,728 + PP_0395 0.77 -2.2
480,728 + PP_0395 0.77 -4.0
480,793 - PP_0395 0.81 -3.6
480,793 - PP_0395 0.81 -0.3
480,793 - PP_0395 0.81 -0.9
480,793 - PP_0395 0.81 -4.5
480,793 - PP_0395 0.81 -4.8
480,821 + PP_0395 0.83 -3.3
480,848 + PP_0395 0.84 -3.0
480,848 + PP_0395 0.84 -4.1
480,849 - PP_0395 0.84 -3.9
480,881 + PP_0395 0.86 -2.9
480,923 + PP_0395 0.89 -0.9
480,924 - PP_0395 0.89 -3.4
480,924 - PP_0395 0.89 -2.4
481,020 - -2.3
481,020 - -1.1
481,020 - -2.2
481,098 + -3.7
481,136 + -4.4
481,137 - +0.1
481,137 - -2.4
481,201 + -3.4
481,201 + -4.4
481,202 - -1.4
481,246 + PP_0396 0.12 -1.8
481,246 + PP_0396 0.12 -2.7
481,246 + PP_0396 0.12 -4.0
481,246 + PP_0396 0.12 -4.3
481,247 - PP_0396 0.12 -3.0
481,252 + PP_0396 0.13 -3.5
481,252 + PP_0396 0.13 -3.2
481,252 + PP_0396 0.13 -2.0
481,252 + PP_0396 0.13 -0.8
481,253 - PP_0396 0.13 -3.7
481,253 - PP_0396 0.13 -2.9
481,253 - PP_0396 0.13 -3.2
481,253 - PP_0396 0.13 -3.0
481,255 + PP_0396 0.13 -2.1
481,255 + PP_0396 0.13 -2.2
481,255 + PP_0396 0.13 -3.3
481,255 + PP_0396 0.13 -2.2
481,256 - PP_0396 0.13 -3.3
481,256 - PP_0396 0.13 -3.2
481,256 - PP_0396 0.13 -3.9
481,348 + PP_0396 0.20 -2.7
481,348 + PP_0396 0.20 -1.2
481,348 + PP_0396 0.20 -2.1
481,349 - PP_0396 0.20 -4.1
481,349 - PP_0396 0.20 -3.9
481,349 - +0.2
481,349 - PP_0396 0.20 -4.4
481,349 - PP_0396 0.20 -3.7
481,349 - PP_0396 0.20 -3.2
481,349 - PP_0396 0.20 -1.9
481,349 - PP_0396 0.20 -4.1
481,404 + PP_0396 0.25 -3.3
481,405 - PP_0396 0.25 -3.3
481,516 + PP_0396 0.34 -3.9
481,516 + PP_0396 0.34 -3.4
481,516 + PP_0396 0.34 -2.3
481,516 + PP_0396 0.34 -2.1
481,520 + PP_0396 0.34 -4.5
481,521 - PP_0396 0.34 -3.0
481,521 - PP_0396 0.34 -2.4
481,537 + PP_0396 0.35 -4.3
481,537 + PP_0396 0.35 -3.3
481,538 - PP_0396 0.35 -2.5
481,596 + PP_0396 0.40 -3.7
481,597 - PP_0396 0.40 -2.0
481,661 - PP_0396 0.45 -2.7
481,661 - PP_0396 0.45 -2.8
481,661 - PP_0396 0.45 -2.8
481,661 - PP_0396 0.45 -3.0
481,661 - PP_0396 0.45 -2.8
481,700 + PP_0396 0.48 -3.7
481,700 + PP_0396 0.48 -4.0
481,700 + PP_0396 0.48 -3.9
481,700 + PP_0396 0.48 -3.9
481,701 - PP_0396 0.48 -3.5
481,701 - PP_0396 0.48 -0.9
481,701 - PP_0396 0.48 -3.4
481,701 - PP_0396 0.48 -3.0
481,701 - PP_0396 0.48 -2.7
481,871 + PP_0396 0.61 -2.5
481,872 - PP_0396 0.62 -2.6
481,965 + PP_0396 0.69 -2.9
482,201 + PP_0396 0.87 -3.6
482,228 - PP_0396 0.90 -1.5
482,273 + -3.2
482,274 - -0.9
482,347 - +0.3
482,347 - -3.6
482,349 - -2.9
482,353 + -1.5
482,353 + -3.7
482,354 - -3.9
482,504 + -2.6
482,505 - -0.7
482,518 - -1.6
482,578 - -3.7
482,722 - PP_0397 0.11 -2.8
482,925 + PP_0397 0.21 -3.9
482,925 + PP_0397 0.21 -3.6
482,925 + PP_0397 0.21 -3.5
482,925 + PP_0397 0.21 +0.2
482,925 + PP_0397 0.21 -2.8
482,926 - PP_0397 0.21 -3.1
482,926 - PP_0397 0.21 -3.1
482,934 + PP_0397 0.22 -1.8
482,934 + PP_0397 0.22 -1.1
482,934 + +0.3
482,934 + PP_0397 0.22 -2.9
482,935 - PP_0397 0.22 -2.4
482,935 - PP_0397 0.22 -4.0
482,935 - PP_0397 0.22 -2.6
482,935 - PP_0397 0.22 -4.6
482,935 - PP_0397 0.22 -2.8
482,968 - PP_0397 0.24 -2.5
482,979 + PP_0397 0.24 -1.6
482,980 - PP_0397 0.24 -3.8
483,015 + PP_0397 0.26 -4.1
483,016 - PP_0397 0.26 -1.9
483,016 - PP_0397 0.26 -1.9
483,016 - PP_0397 0.26 -2.8
483,030 + PP_0397 0.27 -4.4
483,030 + PP_0397 0.27 -3.1
483,051 + PP_0397 0.28 -2.2
483,052 - PP_0397 0.28 -1.3
483,108 + PP_0397 0.31 -1.8
483,108 + PP_0397 0.31 -3.5
483,109 - PP_0397 0.31 -1.1
483,109 - PP_0397 0.31 -4.4
483,109 - PP_0397 0.31 -3.1
483,109 - PP_0397 0.31 -3.6
483,109 - PP_0397 0.31 -3.0
483,109 - PP_0397 0.31 -3.6
483,109 - PP_0397 0.31 -3.4
483,234 + PP_0397 0.37 -4.3
483,307 - PP_0397 0.41 -1.8
483,310 + PP_0397 0.41 -4.0
483,311 - PP_0397 0.41 -2.3

Or see this region's nucleotide sequence