Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6035 and Atu6036 overlap by 7 nucleotides Atu6036 and Atu6037 overlap by 4 nucleotides Atu6037 and Atu6038 overlap by 29 nucleotides
Atu6035: Atu6035 - conjugal transfer protein, at 44,924 to 46,120
Atu6035
Atu6036: Atu6036 - entry-exclusion protein, at 46,114 to 46,332
Atu6036
Atu6037: Atu6037 - conjugal transfer protein, at 46,329 to 47,132
Atu6037
Atu6038: Atu6038 - conjugal transfer protein, at 47,104 to 49,572
Atu6038
Position (kb) 46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 45.123 kb on + strand, within Atu6035 at 45.143 kb on - strand, within Atu6035 at 45.148 kb on - strand, within Atu6035 at 45.235 kb on - strand, within Atu6035 at 45.250 kb on + strand, within Atu6035 at 45.258 kb on - strand, within Atu6035 at 45.268 kb on - strand, within Atu6035 at 45.358 kb on - strand, within Atu6035 at 45.370 kb on + strand, within Atu6035 at 45.413 kb on + strand, within Atu6035 at 45.446 kb on + strand, within Atu6035 at 45.451 kb on + strand, within Atu6035 at 45.479 kb on - strand, within Atu6035 at 45.488 kb on - strand, within Atu6035 at 45.504 kb on + strand, within Atu6035 at 45.523 kb on + strand, within Atu6035 at 45.536 kb on - strand, within Atu6035 at 45.615 kb on + strand, within Atu6035 at 45.769 kb on + strand, within Atu6035 at 45.779 kb on - strand, within Atu6035 at 45.964 kb on - strand, within Atu6035 at 46.013 kb on + strand at 46.013 kb on + strand at 46.013 kb on + strand at 46.013 kb on + strand at 46.021 kb on - strand at 46.021 kb on - strand at 46.021 kb on - strand at 46.021 kb on - strand at 46.026 kb on - strand at 46.026 kb on - strand at 46.050 kb on + strand at 46.058 kb on - strand at 46.066 kb on - strand at 46.068 kb on - strand at 46.090 kb on - strand at 46.114 kb on + strand at 46.190 kb on - strand, within Atu6036 at 46.209 kb on + strand, within Atu6036 at 46.338 kb on - strand at 46.338 kb on - strand at 46.338 kb on - strand at 46.389 kb on - strand at 46.430 kb on - strand, within Atu6037 at 46.440 kb on - strand, within Atu6037 at 46.440 kb on - strand, within Atu6037 at 46.492 kb on - strand, within Atu6037 at 46.537 kb on + strand, within Atu6037 at 46.537 kb on + strand, within Atu6037 at 46.537 kb on + strand, within Atu6037 at 46.545 kb on - strand, within Atu6037 at 46.545 kb on - strand, within Atu6037 at 46.545 kb on - strand, within Atu6037 at 46.545 kb on - strand, within Atu6037 at 46.545 kb on - strand, within Atu6037 at 46.545 kb on - strand, within Atu6037 at 46.560 kb on + strand, within Atu6037 at 46.562 kb on + strand, within Atu6037 at 46.570 kb on - strand, within Atu6037 at 46.570 kb on - strand, within Atu6037 at 46.582 kb on + strand, within Atu6037 at 46.664 kb on + strand, within Atu6037 at 46.682 kb on - strand, within Atu6037 at 46.773 kb on - strand, within Atu6037 at 46.809 kb on + strand, within Atu6037 at 46.826 kb on + strand, within Atu6037 at 46.831 kb on + strand, within Atu6037 at 46.843 kb on + strand, within Atu6037 at 46.843 kb on + strand, within Atu6037 at 46.870 kb on + strand, within Atu6037 at 46.916 kb on + strand, within Atu6037 at 46.928 kb on + strand, within Atu6037 at 46.988 kb on + strand, within Atu6037 at 47.009 kb on + strand, within Atu6037 at 47.066 kb on + strand at 47.074 kb on - strand at 47.074 kb on - strand at 47.077 kb on + strand at 47.082 kb on + strand at 47.085 kb on - strand at 47.090 kb on - strand at 47.160 kb on + strand at 47.204 kb on + strand at 47.214 kb on - strand at 47.214 kb on - strand at 47.282 kb on - strand at 47.304 kb on - strand at 47.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 45,123 + Atu6035 0.17 -0.2 45,143 - Atu6035 0.18 -0.5 45,148 - Atu6035 0.19 +0.8 45,235 - Atu6035 0.26 -0.2 45,250 + Atu6035 0.27 +0.2 45,258 - Atu6035 0.28 -0.4 45,268 - Atu6035 0.29 -0.2 45,358 - Atu6035 0.36 -0.5 45,370 + Atu6035 0.37 +0.3 45,413 + Atu6035 0.41 +1.2 45,446 + Atu6035 0.44 +0.2 45,451 + Atu6035 0.44 -1.2 45,479 - Atu6035 0.46 +0.2 45,488 - Atu6035 0.47 -0.3 45,504 + Atu6035 0.48 -0.0 45,523 + Atu6035 0.50 -1.6 45,536 - Atu6035 0.51 +0.3 45,615 + Atu6035 0.58 -1.5 45,769 + Atu6035 0.71 -0.6 45,779 - Atu6035 0.71 +0.9 45,964 - Atu6035 0.87 +0.3 46,013 + +0.3 46,013 + -0.1 46,013 + -0.6 46,013 + +0.2 46,021 - +0.6 46,021 - -0.9 46,021 - -1.3 46,021 - +0.0 46,026 - -0.2 46,026 - -0.9 46,050 + +0.4 46,058 - +1.3 46,066 - +0.2 46,068 - +0.5 46,090 - +0.8 46,114 + -1.2 46,190 - Atu6036 0.35 -0.1 46,209 + Atu6036 0.43 -1.2 46,338 - +0.7 46,338 - -0.8 46,338 - +0.5 46,389 - -1.2 46,430 - Atu6037 0.13 +0.7 46,440 - Atu6037 0.14 +0.1 46,440 - Atu6037 0.14 -0.5 46,492 - Atu6037 0.20 -0.2 46,537 + Atu6037 0.26 -1.0 46,537 + Atu6037 0.26 -0.7 46,537 + Atu6037 0.26 -0.2 46,545 - Atu6037 0.27 +0.1 46,545 - Atu6037 0.27 +0.3 46,545 - Atu6037 0.27 -0.2 46,545 - Atu6037 0.27 -0.0 46,545 - Atu6037 0.27 -2.4 46,545 - Atu6037 0.27 +0.7 46,560 + Atu6037 0.29 +0.3 46,562 + Atu6037 0.29 -0.1 46,570 - Atu6037 0.30 +0.4 46,570 - Atu6037 0.30 +1.3 46,582 + Atu6037 0.31 +0.1 46,664 + Atu6037 0.42 -0.3 46,682 - Atu6037 0.44 +0.4 46,773 - Atu6037 0.55 -0.5 46,809 + Atu6037 0.60 -0.2 46,826 + Atu6037 0.62 +0.1 46,831 + Atu6037 0.62 +0.7 46,843 + Atu6037 0.64 +0.9 46,843 + Atu6037 0.64 +0.2 46,870 + Atu6037 0.67 -2.2 46,916 + Atu6037 0.73 -0.5 46,928 + Atu6037 0.75 +0.9 46,988 + Atu6037 0.82 -0.1 47,009 + Atu6037 0.85 +0.1 47,066 + +0.3 47,074 - -0.2 47,074 - +0.6 47,077 + -0.5 47,082 + -0.6 47,085 - +0.1 47,090 - +0.1 47,160 + -0.6 47,204 + -0.1 47,214 - +0.3 47,214 - +0.2 47,282 - -0.4 47,304 - -0.2 47,322 + +0.3
Or see this region's nucleotide sequence