Strain Fitness in Agrobacterium fabrum C58 around Atu4728

Experiment: Streptomycin 200 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Streptomycin 200 ug/mL
1,890,377	+		Atu4727	0.46	+0.6
1,890,377	+		Atu4727	0.46	+0.5
1,890,377	+		Atu4727	0.46	+0.0
1,890,385	-		Atu4727	0.47	+0.1
1,890,385	-		Atu4727	0.47	+0.3
1,890,385	-		Atu4727	0.47	+1.4
1,890,391	-		Atu4727	0.47	+0.6
1,890,402	+		Atu4727	0.48	-0.3
1,890,460	-		Atu4727	0.54	+0.7
1,890,499	-		Atu4727	0.58	+0.4
1,890,507	-		Atu4727	0.59	-0.3
1,890,508	-		Atu4727	0.59	-0.0
1,890,748	-		Atu4727	0.83	+1.2
1,890,800	+		Atu4727	0.89	+0.6
1,890,926	-				+1.4
1,890,957	+				+0.3
1,890,999	-				-0.2
1,891,135	+				+0.7
1,891,221	-				+1.9
1,891,365	+				-3.3
1,891,412	-				-0.6
1,891,627	+		Atu4728	0.14	-0.6
1,891,645	-		Atu4728	0.15	-1.6
1,891,682	-		Atu4728	0.17	-1.7
1,891,724	+		Atu4728	0.20	-1.9
1,891,724	-		Atu4728	0.20	-3.3
1,891,777	-		Atu4728	0.23	-3.9
1,891,799	+		Atu4728	0.24	-2.8
1,891,830	+		Atu4728	0.25	-3.6
1,891,853	+		Atu4728	0.27	-1.1
1,891,864	+		Atu4728	0.27	-4.0
1,891,864	+		Atu4728	0.27	-0.1
1,891,872	-		Atu4728	0.28	-0.1
1,891,872	-		Atu4728	0.28	-3.0
1,891,957	+		Atu4728	0.33	-3.0
1,891,957	+		Atu4728	0.33	-2.6
1,892,046	+		Atu4728	0.37	-1.7
1,892,061	+		Atu4728	0.38	-2.6
1,892,150	-		Atu4728	0.43	-3.0
1,892,152	+		Atu4728	0.43	-3.8
1,892,152	+		Atu4728	0.43	-2.7
1,892,155	-		Atu4728	0.43	-1.6
1,892,157	+		Atu4728	0.44	-2.0
1,892,157	+		Atu4728	0.44	-2.7
1,892,157	+		Atu4728	0.44	-2.4
1,892,157	+		Atu4728	0.44	-2.3
1,892,157	+		Atu4728	0.44	-3.8
1,892,160	-		Atu4728	0.44	-2.6
1,892,165	-		Atu4728	0.44	-2.1
1,892,195	+		Atu4728	0.46	-2.0
1,892,203	-		Atu4728	0.46	-2.0
1,892,216	-		Atu4728	0.47	-2.7
1,892,216	-		Atu4728	0.47	-3.1
1,892,226	+		Atu4728	0.47	-3.1
1,892,226	+		Atu4728	0.47	-3.3
1,892,234	-		Atu4728	0.48	-1.6
1,892,234	-		Atu4728	0.48	-3.1
1,892,234	-		Atu4728	0.48	-3.0
1,892,304	-		Atu4728	0.52	-1.6
1,892,379	+		Atu4728	0.56	-4.8
1,892,387	-		Atu4728	0.56	-1.4
1,892,420	+		Atu4728	0.58	-2.8
1,892,497	+		Atu4728	0.62	-2.0
1,892,497	+		Atu4728	0.62	+0.4
1,892,505	-		Atu4728	0.63	-2.3
1,892,528	-		Atu4728	0.64	-3.8
1,892,591	+		Atu4728	0.68	-3.3
1,892,591	+		Atu4728	0.68	-2.1
1,892,626	-		Atu4728	0.70	-2.9
1,892,677	+		Atu4728	0.72	-3.9
1,892,702	+		Atu4728	0.74	-2.6
1,892,784	-		Atu4728	0.78	-1.6
1,892,813	-		Atu4728	0.80	-2.4
1,892,813	-		Atu4728	0.80	-2.8
1,892,841	-		Atu4728	0.82	-3.4
1,892,843	+		Atu4728	0.82	-4.1
1,892,909	-		Atu4728	0.85	+0.1
1,892,952	-		Atu4728	0.88	-3.0
1,893,009	-				-3.2
1,893,067	+				-2.3
1,893,093	-				-2.5
1,893,104	+				-2.1
1,893,142	+				+1.4
1,893,155	-				-4.1
1,893,217	+				+0.1
1,893,253	+				+0.7
1,893,344	+				-0.5
1,893,344	+				-0.3
1,893,344	+				+0.3
1,893,345	+				-1.6
1,893,353	-				+0.5
1,893,364	+				+3.0
1,893,389	+				+0.1
1,893,498	-				-1.3
1,893,540	-		Atu4729	0.12	-0.1
1,893,616	-		Atu4729	0.16	-0.2
1,893,730	-		Atu4729	0.23	+0.4
1,893,730	-		Atu4729	0.23	-0.9
1,893,747	-		Atu4729	0.25	-0.2
1,893,754	-		Atu4729	0.25	-0.1
1,893,767	+		Atu4729	0.26	+0.4
1,893,790	+		Atu4729	0.27	-0.2
1,893,790	+		Atu4729	0.27	+0.1
1,893,809	+		Atu4729	0.28	+0.3
1,893,809	+		Atu4729	0.28	+1.4
1,893,817	-		Atu4729	0.29	+1.2
1,893,817	-		Atu4729	0.29	+0.4
1,893,817	-		Atu4729	0.29	+0.6
1,893,817	-		Atu4729	0.29	-0.7
1,893,934	+		Atu4729	0.36	-0.2
1,893,945	+		Atu4729	0.37	-0.1
1,894,048	+		Atu4729	0.43	-0.6
1,894,048	+		Atu4729	0.43	-0.1
1,894,053	+		Atu4729	0.44	+2.4
1,894,145	-		Atu4729	0.49	+0.2
1,894,148	-		Atu4729	0.50	-0.4