Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3866 and Atu3867 are separated by 4 nucleotides Atu3867 and Atu3868 are separated by 168 nucleotides
Atu3866: Atu3866 - hypothetical protein, at 957,239 to 959,644
Atu3866
Atu3867: Atu3867 - hypothetical protein, at 959,649 to 960,527
Atu3867
Atu3868: Atu3868 - hypothetical protein, at 960,696 to 961,934
Atu3868
Position (kb) 959
960
961 Strain fitness (log2 ratio) -2
-1
0
1
2 at 958.741 kb on + strand, within Atu3866 at 958.778 kb on - strand, within Atu3866 at 958.822 kb on + strand, within Atu3866 at 958.830 kb on - strand, within Atu3866 at 958.940 kb on + strand, within Atu3866 at 958.967 kb on - strand, within Atu3866 at 959.002 kb on + strand, within Atu3866 at 959.017 kb on + strand, within Atu3866 at 959.088 kb on - strand, within Atu3866 at 959.286 kb on + strand, within Atu3866 at 959.294 kb on - strand, within Atu3866 at 959.373 kb on - strand, within Atu3866 at 959.373 kb on - strand, within Atu3866 at 959.391 kb on + strand, within Atu3866 at 959.462 kb on + strand at 959.587 kb on + strand at 959.644 kb on + strand at 959.644 kb on + strand at 959.652 kb on - strand at 959.652 kb on - strand at 959.652 kb on - strand at 959.669 kb on + strand at 959.675 kb on + strand at 959.675 kb on + strand at 959.675 kb on + strand at 959.683 kb on - strand at 959.684 kb on - strand at 959.735 kb on + strand at 959.743 kb on - strand, within Atu3867 at 959.796 kb on - strand, within Atu3867 at 959.806 kb on + strand, within Atu3867 at 959.905 kb on - strand, within Atu3867 at 959.966 kb on + strand, within Atu3867 at 960.022 kb on - strand, within Atu3867 at 960.025 kb on + strand, within Atu3867 at 960.163 kb on - strand, within Atu3867 at 960.175 kb on + strand, within Atu3867 at 960.228 kb on + strand, within Atu3867 at 960.246 kb on - strand, within Atu3867 at 960.260 kb on + strand, within Atu3867 at 960.288 kb on - strand, within Atu3867 at 960.303 kb on - strand, within Atu3867 at 960.322 kb on - strand, within Atu3867 at 960.442 kb on - strand at 960.442 kb on - strand at 960.465 kb on + strand at 960.498 kb on - strand at 960.603 kb on - strand at 960.666 kb on + strand at 960.697 kb on - strand at 960.700 kb on - strand at 960.780 kb on - strand at 960.849 kb on + strand, within Atu3868 at 960.906 kb on - strand, within Atu3868 at 960.909 kb on + strand, within Atu3868 at 960.911 kb on - strand, within Atu3868 at 960.924 kb on + strand, within Atu3868 at 961.055 kb on + strand, within Atu3868 at 961.055 kb on + strand, within Atu3868 at 961.063 kb on - strand, within Atu3868 at 961.063 kb on - strand, within Atu3868 at 961.169 kb on + strand, within Atu3868 at 961.215 kb on + strand, within Atu3868 at 961.223 kb on - strand, within Atu3868 at 961.223 kb on - strand, within Atu3868 at 961.235 kb on + strand, within Atu3868 at 961.248 kb on - strand, within Atu3868 at 961.254 kb on - strand, within Atu3868 at 961.258 kb on - strand, within Atu3868 at 961.330 kb on - strand, within Atu3868 at 961.354 kb on - strand, within Atu3868 at 961.382 kb on + strand, within Atu3868 at 961.382 kb on + strand, within Atu3868 at 961.382 kb on + strand, within Atu3868 at 961.390 kb on - strand, within Atu3868 at 961.390 kb on - strand, within Atu3868 at 961.390 kb on - strand, within Atu3868 at 961.392 kb on + strand, within Atu3868 at 961.397 kb on + strand, within Atu3868 at 961.400 kb on - strand, within Atu3868
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 958,741 + Atu3866 0.62 -0.2 958,778 - Atu3866 0.64 -0.3 958,822 + Atu3866 0.66 -0.3 958,830 - Atu3866 0.66 -0.3 958,940 + Atu3866 0.71 -0.5 958,967 - Atu3866 0.72 -0.0 959,002 + Atu3866 0.73 -1.5 959,017 + Atu3866 0.74 +0.8 959,088 - Atu3866 0.77 -0.4 959,286 + Atu3866 0.85 -0.6 959,294 - Atu3866 0.85 -0.6 959,373 - Atu3866 0.89 -0.4 959,373 - Atu3866 0.89 +0.2 959,391 + Atu3866 0.89 -0.5 959,462 + -0.3 959,587 + -0.2 959,644 + +0.2 959,644 + -0.3 959,652 - -0.6 959,652 - +0.4 959,652 - -0.4 959,669 + -0.1 959,675 + -0.3 959,675 + -0.2 959,675 + +0.1 959,683 - -0.5 959,684 - -0.6 959,735 + -0.7 959,743 - Atu3867 0.11 -0.6 959,796 - Atu3867 0.17 -0.2 959,806 + Atu3867 0.18 +0.4 959,905 - Atu3867 0.29 +0.0 959,966 + Atu3867 0.36 -1.7 960,022 - Atu3867 0.42 -1.8 960,025 + Atu3867 0.43 -0.9 960,163 - Atu3867 0.58 -0.2 960,175 + Atu3867 0.60 +0.0 960,228 + Atu3867 0.66 -2.4 960,246 - Atu3867 0.68 -0.6 960,260 + Atu3867 0.70 -0.5 960,288 - Atu3867 0.73 +0.4 960,303 - Atu3867 0.74 -1.4 960,322 - Atu3867 0.77 -0.6 960,442 - -0.3 960,442 - -0.4 960,465 + -1.3 960,498 - -0.4 960,603 - +1.4 960,666 + -0.1 960,697 - +0.3 960,700 - -0.5 960,780 - -0.5 960,849 + Atu3868 0.12 +1.0 960,906 - Atu3868 0.17 +2.4 960,909 + Atu3868 0.17 +0.6 960,911 - Atu3868 0.17 +0.4 960,924 + Atu3868 0.18 -0.0 961,055 + Atu3868 0.29 +0.3 961,055 + Atu3868 0.29 -0.8 961,063 - Atu3868 0.30 +0.5 961,063 - Atu3868 0.30 +0.5 961,169 + Atu3868 0.38 +1.1 961,215 + Atu3868 0.42 -0.2 961,223 - Atu3868 0.43 -0.5 961,223 - Atu3868 0.43 -0.6 961,235 + Atu3868 0.44 +0.2 961,248 - Atu3868 0.45 +0.4 961,254 - Atu3868 0.45 +0.2 961,258 - Atu3868 0.45 +0.2 961,330 - Atu3868 0.51 -0.2 961,354 - Atu3868 0.53 -0.2 961,382 + Atu3868 0.55 +0.6 961,382 + Atu3868 0.55 -0.0 961,382 + Atu3868 0.55 -0.5 961,390 - Atu3868 0.56 -0.4 961,390 - Atu3868 0.56 +0.4 961,390 - Atu3868 0.56 +0.4 961,392 + Atu3868 0.56 -1.1 961,397 + Atu3868 0.57 +0.0 961,400 - Atu3868 0.57 +0.4
Or see this region's nucleotide sequence