Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3705 and Atu3706 are separated by 657 nucleotides Atu3706 and Atu3707 are separated by 83 nucleotides
Atu3705: Atu3705 - hypothetical protein, at 784,049 to 784,696
Atu3705
Atu3706: Atu3706 - D-3-phosphoglycerate dehydrogenase, at 785,354 to 786,949
Atu3706
Atu3707: Atu3707 - phosphoserine aminotransferase, at 787,033 to 788,211
Atu3707
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2 at 784.379 kb on - strand, within Atu3705 at 784.484 kb on - strand, within Atu3705 at 784.529 kb on + strand, within Atu3705 at 784.980 kb on + strand at 784.989 kb on + strand at 785.152 kb on + strand at 785.152 kb on + strand at 785.154 kb on + strand at 785.160 kb on - strand at 785.322 kb on + strand at 785.540 kb on - strand, within Atu3706 at 785.762 kb on - strand, within Atu3706 at 785.762 kb on - strand, within Atu3706 at 785.772 kb on + strand, within Atu3706 at 785.843 kb on + strand, within Atu3706 at 785.851 kb on - strand, within Atu3706 at 785.851 kb on - strand, within Atu3706 at 785.851 kb on - strand, within Atu3706 at 785.851 kb on - strand, within Atu3706 at 785.936 kb on + strand, within Atu3706 at 786.034 kb on - strand, within Atu3706 at 786.061 kb on + strand, within Atu3706 at 786.285 kb on - strand, within Atu3706 at 786.384 kb on + strand, within Atu3706 at 786.387 kb on - strand, within Atu3706 at 786.422 kb on + strand, within Atu3706 at 786.750 kb on - strand, within Atu3706 at 787.079 kb on - strand at 787.388 kb on - strand, within Atu3707 at 787.454 kb on - strand, within Atu3707 at 787.719 kb on - strand, within Atu3707 at 787.833 kb on + strand, within Atu3707
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 784,379 - Atu3705 0.51 -0.2 784,484 - Atu3705 0.67 -0.9 784,529 + Atu3705 0.74 -0.3 784,980 + -1.7 784,989 + -0.3 785,152 + -0.4 785,152 + +0.0 785,154 + +1.4 785,160 - -1.0 785,322 + -0.5 785,540 - Atu3706 0.12 -0.2 785,762 - Atu3706 0.26 -1.4 785,762 - Atu3706 0.26 -2.1 785,772 + Atu3706 0.26 -1.2 785,843 + Atu3706 0.31 -0.9 785,851 - Atu3706 0.31 -0.2 785,851 - Atu3706 0.31 -1.2 785,851 - Atu3706 0.31 +0.4 785,851 - Atu3706 0.31 -0.2 785,936 + Atu3706 0.36 +2.4 786,034 - Atu3706 0.43 +1.4 786,061 + Atu3706 0.44 +0.4 786,285 - Atu3706 0.58 -0.8 786,384 + Atu3706 0.65 +1.4 786,387 - Atu3706 0.65 -0.5 786,422 + Atu3706 0.67 +1.4 786,750 - Atu3706 0.87 -0.4 787,079 - -0.1 787,388 - Atu3707 0.30 +0.1 787,454 - Atu3707 0.36 +1.4 787,719 - Atu3707 0.58 +0.2 787,833 + Atu3707 0.68 +1.4
Or see this region's nucleotide sequence