Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3495 and Atu3496 are separated by 9 nucleotides Atu3496 and Atu3497 are separated by 180 nucleotides Atu3497 and Atu3498 are separated by 69 nucleotides
Atu3495: Atu3495 - diguanylate cyclase, at 545,969 to 547,903
Atu3495
Atu3496: Atu3496 - hypothetical protein, at 547,913 to 548,419
Atu3496
Atu3497: Atu3497 - hypothetical protein, at 548,600 to 548,947
Atu3497
Atu3498: Atu3498 - aldehyde dehydrogenase, at 549,017 to 550,453
Atu3498
Position (kb) 547
548
549 Strain fitness (log2 ratio) -1
0
1
2 at 547.069 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.327 kb on - strand, within Atu3495 at 547.409 kb on - strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.544 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.558 kb on + strand, within Atu3495 at 547.635 kb on + strand, within Atu3495 at 547.826 kb on - strand at 547.877 kb on - strand at 547.883 kb on - strand at 548.113 kb on - strand, within Atu3496 at 548.232 kb on - strand, within Atu3496 at 548.404 kb on - strand at 548.624 kb on - strand at 548.827 kb on - strand, within Atu3497 at 548.907 kb on - strand, within Atu3497 at 548.988 kb on + strand at 548.988 kb on + strand at 548.988 kb on + strand at 548.998 kb on + strand at 549.009 kb on - strand at 549.025 kb on - strand at 549.030 kb on - strand at 549.061 kb on + strand at 549.183 kb on + strand, within Atu3498 at 549.243 kb on + strand, within Atu3498 at 549.251 kb on - strand, within Atu3498 at 549.273 kb on - strand, within Atu3498 at 549.298 kb on + strand, within Atu3498 at 549.381 kb on + strand, within Atu3498 at 549.389 kb on - strand, within Atu3498 at 549.389 kb on - strand, within Atu3498 at 549.391 kb on + strand, within Atu3498
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 547,069 + Atu3495 0.57 +0.4 547,319 + Atu3495 0.70 +0.3 547,319 + Atu3495 0.70 -1.0 547,319 + Atu3495 0.70 -0.1 547,319 + Atu3495 0.70 -0.5 547,327 - Atu3495 0.70 -0.8 547,409 - Atu3495 0.74 -0.9 547,537 + Atu3495 0.81 -0.5 547,537 + Atu3495 0.81 -0.4 547,544 - Atu3495 0.81 -0.4 547,545 - Atu3495 0.81 -0.4 547,545 - Atu3495 0.81 -0.5 547,553 - Atu3495 0.82 +0.3 547,553 - Atu3495 0.82 +0.2 547,558 + Atu3495 0.82 -1.1 547,635 + Atu3495 0.86 +1.3 547,826 - -1.7 547,877 - -0.4 547,883 - -0.6 548,113 - Atu3496 0.39 -0.8 548,232 - Atu3496 0.63 -1.5 548,404 - -0.7 548,624 - -0.3 548,827 - Atu3497 0.65 +0.3 548,907 - Atu3497 0.88 -0.2 548,988 + -0.1 548,988 + -0.3 548,988 + -0.3 548,998 + +0.0 549,009 - -1.0 549,025 - +1.1 549,030 - +0.3 549,061 + +0.3 549,183 + Atu3498 0.12 +0.1 549,243 + Atu3498 0.16 -0.5 549,251 - Atu3498 0.16 +0.3 549,273 - Atu3498 0.18 +0.3 549,298 + Atu3498 0.20 +0.1 549,381 + Atu3498 0.25 +0.4 549,389 - Atu3498 0.26 -1.0 549,389 - Atu3498 0.26 -0.7 549,391 + Atu3498 0.26 +2.2
Or see this region's nucleotide sequence