Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2183 and Atu2184 are separated by 30 nucleotides Atu2184 and Atu2185 are separated by 131 nucleotides
Atu2183: Atu2183 - lipopolysaccharide core biosynthesis mannosyltransferase, at 2,159,353 to 2,160,408
Atu2183
Atu2184: Atu2184 - transcriptional regulator, AsnC family, at 2,160,439 to 2,161,029
Atu2184
Atu2185: Atu2185 - thioredoxin reductase, at 2,161,161 to 2,162,135
Atu2185
Position (kb)
2160
2161
2162 Strain fitness (log2 ratio)
-2
-1
0
1 at 2159.473 kb on - strand, within Atu2183 at 2159.481 kb on - strand, within Atu2183 at 2159.647 kb on - strand, within Atu2183 at 2159.799 kb on + strand, within Atu2183 at 2159.799 kb on + strand, within Atu2183 at 2159.980 kb on + strand, within Atu2183 at 2160.014 kb on - strand, within Atu2183 at 2160.057 kb on + strand, within Atu2183 at 2160.128 kb on + strand, within Atu2183 at 2160.175 kb on + strand, within Atu2183 at 2160.258 kb on + strand, within Atu2183 at 2160.290 kb on + strand, within Atu2183 at 2160.298 kb on - strand, within Atu2183 at 2160.300 kb on + strand, within Atu2183 at 2160.308 kb on - strand at 2160.308 kb on - strand at 2160.391 kb on + strand at 2160.559 kb on - strand, within Atu2184 at 2160.602 kb on + strand, within Atu2184 at 2160.602 kb on + strand, within Atu2184 at 2160.740 kb on + strand, within Atu2184 at 2160.764 kb on - strand, within Atu2184 at 2160.825 kb on + strand, within Atu2184 at 2160.899 kb on - strand, within Atu2184 at 2160.901 kb on + strand, within Atu2184 at 2160.944 kb on - strand, within Atu2184 at 2161.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 2,159,473 - Atu2183 0.11 +0.3 2,159,481 - Atu2183 0.12 -0.2 2,159,647 - Atu2183 0.28 -0.3 2,159,799 + Atu2183 0.42 -0.2 2,159,799 + Atu2183 0.42 -0.1 2,159,980 + Atu2183 0.59 -0.3 2,160,014 - Atu2183 0.63 -0.4 2,160,057 + Atu2183 0.67 +0.1 2,160,128 + Atu2183 0.73 -0.0 2,160,175 + Atu2183 0.78 -0.3 2,160,258 + Atu2183 0.86 +0.6 2,160,290 + Atu2183 0.89 +0.0 2,160,298 - Atu2183 0.89 +0.4 2,160,300 + Atu2183 0.90 -0.0 2,160,308 - +0.5 2,160,308 - +1.6 2,160,391 + -0.1 2,160,559 - Atu2184 0.20 -1.0 2,160,602 + Atu2184 0.28 -1.6 2,160,602 + Atu2184 0.28 -2.5 2,160,740 + Atu2184 0.51 +0.4 2,160,764 - Atu2184 0.55 -2.6 2,160,825 + Atu2184 0.65 -0.4 2,160,899 - Atu2184 0.78 +1.4 2,160,901 + Atu2184 0.78 -1.7 2,160,944 - Atu2184 0.85 +0.4 2,161,024 + -0.9
Or see this region's nucleotide sequence