Strain Fitness in Agrobacterium fabrum C58 around Atu2184
Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Streptomycin 200 ug/mL |
---|---|---|---|---|---|
remove | |||||
2,159,473 | - | Atu2183 | 0.11 | +0.3 | |
2,159,481 | - | Atu2183 | 0.12 | -0.2 | |
2,159,647 | - | Atu2183 | 0.28 | -0.3 | |
2,159,799 | + | Atu2183 | 0.42 | -0.2 | |
2,159,799 | + | Atu2183 | 0.42 | -0.1 | |
2,159,980 | + | Atu2183 | 0.59 | -0.3 | |
2,160,014 | - | Atu2183 | 0.63 | -0.4 | |
2,160,057 | + | Atu2183 | 0.67 | +0.1 | |
2,160,128 | + | Atu2183 | 0.73 | -0.0 | |
2,160,175 | + | Atu2183 | 0.78 | -0.3 | |
2,160,258 | + | Atu2183 | 0.86 | +0.6 | |
2,160,290 | + | Atu2183 | 0.89 | +0.0 | |
2,160,298 | - | Atu2183 | 0.89 | +0.4 | |
2,160,300 | + | Atu2183 | 0.90 | -0.0 | |
2,160,308 | - | +0.5 | |||
2,160,308 | - | +1.6 | |||
2,160,391 | + | -0.1 | |||
2,160,559 | - | Atu2184 | 0.20 | -1.0 | |
2,160,602 | + | Atu2184 | 0.28 | -1.6 | |
2,160,602 | + | Atu2184 | 0.28 | -2.5 | |
2,160,740 | + | Atu2184 | 0.51 | +0.4 | |
2,160,764 | - | Atu2184 | 0.55 | -2.6 | |
2,160,825 | + | Atu2184 | 0.65 | -0.4 | |
2,160,899 | - | Atu2184 | 0.78 | +1.4 | |
2,160,901 | + | Atu2184 | 0.78 | -1.7 | |
2,160,944 | - | Atu2184 | 0.85 | +0.4 | |
2,161,024 | + | -0.9 |
Or see this region's nucleotide sequence