Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2068 and Atu2069 overlap by 4 nucleotides Atu2069 and Atu2070 overlap by 4 nucleotides Atu2070 and Atu2071 are separated by 244 nucleotides Atu2071 and Atu2072 are separated by 141 nucleotides
Atu2068: Atu2068 - hypothetical protein, at 2,029,650 to 2,030,372
Atu2068
Atu2069: Atu2069 - hypothetical protein, at 2,030,369 to 2,030,683
Atu2069
Atu2070: Atu2070 - aminopeptidase P, at 2,030,680 to 2,032,521
Atu2070
Atu2071: Atu2071 - hypothetical protein, at 2,032,766 to 2,032,993
Atu2071
Atu2072: Atu2072 - ribosomal protein L11 methyltransferase, at 2,033,135 to 2,034,013
Atu2072
Position (kb)
2030
2031
2032
2033 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2029.795 kb on + strand, within Atu2068 at 2029.917 kb on - strand, within Atu2068 at 2030.057 kb on + strand, within Atu2068 at 2030.065 kb on - strand, within Atu2068 at 2030.142 kb on - strand, within Atu2068 at 2030.172 kb on + strand, within Atu2068 at 2030.180 kb on - strand, within Atu2068 at 2030.198 kb on + strand, within Atu2068 at 2030.522 kb on + strand, within Atu2069 at 2030.594 kb on + strand, within Atu2069 at 2030.602 kb on - strand, within Atu2069 at 2030.619 kb on + strand, within Atu2069 at 2030.692 kb on + strand at 2030.751 kb on + strand at 2030.983 kb on + strand, within Atu2070 at 2031.008 kb on + strand, within Atu2070 at 2031.187 kb on + strand, within Atu2070 at 2031.195 kb on - strand, within Atu2070 at 2031.195 kb on - strand, within Atu2070 at 2031.237 kb on + strand, within Atu2070 at 2031.439 kb on - strand, within Atu2070 at 2031.514 kb on + strand, within Atu2070 at 2031.613 kb on - strand, within Atu2070 at 2031.688 kb on + strand, within Atu2070 at 2031.706 kb on + strand, within Atu2070 at 2031.723 kb on - strand, within Atu2070 at 2031.748 kb on - strand, within Atu2070 at 2031.838 kb on - strand, within Atu2070 at 2031.925 kb on + strand, within Atu2070 at 2031.935 kb on + strand, within Atu2070 at 2031.935 kb on - strand, within Atu2070 at 2032.004 kb on + strand, within Atu2070 at 2032.178 kb on - strand, within Atu2070 at 2032.227 kb on + strand, within Atu2070 at 2032.230 kb on - strand, within Atu2070 at 2032.245 kb on - strand, within Atu2070 at 2032.270 kb on - strand, within Atu2070 at 2032.349 kb on - strand at 2032.519 kb on - strand at 2032.587 kb on + strand at 2032.590 kb on - strand at 2032.592 kb on + strand at 2032.622 kb on + strand at 2032.622 kb on + strand at 2032.710 kb on + strand at 2032.764 kb on + strand at 2032.764 kb on + strand at 2032.943 kb on - strand, within Atu2071 at 2033.030 kb on + strand at 2033.035 kb on + strand at 2033.035 kb on + strand at 2033.140 kb on - strand at 2033.141 kb on - strand at 2033.155 kb on + strand at 2033.167 kb on + strand at 2033.353 kb on + strand, within Atu2072 at 2033.353 kb on + strand, within Atu2072 at 2033.368 kb on + strand, within Atu2072 at 2033.490 kb on - strand, within Atu2072 at 2033.516 kb on + strand, within Atu2072
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 2,029,795 + Atu2068 0.20 -1.1 2,029,917 - Atu2068 0.37 +0.3 2,030,057 + Atu2068 0.56 +0.0 2,030,065 - Atu2068 0.57 -1.7 2,030,142 - Atu2068 0.68 +0.6 2,030,172 + Atu2068 0.72 +0.3 2,030,180 - Atu2068 0.73 -0.0 2,030,198 + Atu2068 0.76 -0.3 2,030,522 + Atu2069 0.49 -0.1 2,030,594 + Atu2069 0.71 -0.1 2,030,602 - Atu2069 0.74 -0.5 2,030,619 + Atu2069 0.79 -0.3 2,030,692 + -2.1 2,030,751 + -1.8 2,030,983 + Atu2070 0.16 +1.3 2,031,008 + Atu2070 0.18 -2.3 2,031,187 + Atu2070 0.28 -1.3 2,031,195 - Atu2070 0.28 -2.9 2,031,195 - Atu2070 0.28 -1.5 2,031,237 + Atu2070 0.30 -2.6 2,031,439 - Atu2070 0.41 -2.1 2,031,514 + Atu2070 0.45 -3.0 2,031,613 - Atu2070 0.51 -2.3 2,031,688 + Atu2070 0.55 -2.2 2,031,706 + Atu2070 0.56 +1.3 2,031,723 - Atu2070 0.57 -2.6 2,031,748 - Atu2070 0.58 +0.3 2,031,838 - Atu2070 0.63 -2.5 2,031,925 + Atu2070 0.68 -1.3 2,031,935 + Atu2070 0.68 -2.3 2,031,935 - Atu2070 0.68 -2.3 2,032,004 + Atu2070 0.72 -2.1 2,032,178 - Atu2070 0.81 -2.4 2,032,227 + Atu2070 0.84 -1.3 2,032,230 - Atu2070 0.84 -1.7 2,032,245 - Atu2070 0.85 -1.3 2,032,270 - Atu2070 0.86 -3.5 2,032,349 - -2.0 2,032,519 - -2.3 2,032,587 + -0.3 2,032,590 - -0.7 2,032,592 + -0.2 2,032,622 + +0.2 2,032,622 + +0.6 2,032,710 + +0.1 2,032,764 + +0.5 2,032,764 + -0.5 2,032,943 - Atu2071 0.78 +1.3 2,033,030 + -0.5 2,033,035 + -0.3 2,033,035 + +0.5 2,033,140 - -1.0 2,033,141 - +0.2 2,033,155 + -1.7 2,033,167 + -2.0 2,033,353 + Atu2072 0.25 -1.8 2,033,353 + Atu2072 0.25 -0.9 2,033,368 + Atu2072 0.27 -0.5 2,033,490 - Atu2072 0.40 -1.0 2,033,516 + Atu2072 0.43 -2.7
Or see this region's nucleotide sequence