Strain Fitness in Agrobacterium fabrum C58 around Atu1356

Experiment: Streptomycin 200 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Streptomycin 200 ug/mL
1,348,426	+		Atu1354	0.87	+1.4
1,348,426	+		Atu1354	0.87	+1.0
1,348,465	-				-1.4
1,348,475	+				+0.2
1,348,578	-		Atu1355	0.13	+1.2
1,348,582	-		Atu1355	0.14	-0.1
1,348,694	+		Atu1355	0.34	+1.4
1,348,694	+		Atu1355	0.34	-0.1
1,348,702	-		Atu1355	0.35	+0.8
1,348,720	-		Atu1355	0.38	+0.5
1,348,751	-		Atu1355	0.44	+0.7
1,348,843	+		Atu1355	0.60	+0.3
1,348,851	-		Atu1355	0.62	+0.1
1,348,929	-		Atu1355	0.76	-0.2
1,348,957	-		Atu1355	0.81	-0.1
1,348,957	-		Atu1355	0.81	+1.4
1,349,036	+				-0.2
1,349,263	-				-1.6
1,349,513	-		Atu1356	0.29	-1.2
1,349,541	+		Atu1356	0.32	+0.2
1,349,549	-		Atu1356	0.33	-0.7
1,349,728	-		Atu1356	0.49	-0.6
1,349,777	-		Atu1356	0.54	-1.6
1,349,807	-		Atu1356	0.57	-0.8
1,349,847	-		Atu1356	0.60	-1.1
1,349,854	-		Atu1356	0.61	-0.1
1,349,864	-		Atu1356	0.62	-0.9
1,349,939	+		Atu1356	0.69	+1.2
1,349,948	-		Atu1356	0.70	+0.8
1,349,976	+		Atu1356	0.72	-0.0
1,350,017	-		Atu1356	0.76	-3.0
1,350,132	-		Atu1356	0.87	+0.4
1,350,141	-		Atu1356	0.88	-0.6
1,350,216	-				-1.2
1,350,216	-				-1.0
1,350,278	+				+2.4
1,350,389	+				+0.3
1,350,389	+				-1.2
1,350,397	-				-2.0
1,350,421	+		Atu1357	0.10	-1.1
1,350,434	-		Atu1357	0.11	+0.4
1,350,529	+		Atu1357	0.17	-1.1
1,350,566	-		Atu1357	0.20	+0.6
1,350,566	-		Atu1357	0.20	-0.6
1,350,566	-		Atu1357	0.20	-0.9
1,350,696	+		Atu1357	0.29	-0.3
1,350,733	-		Atu1357	0.31	-1.3
1,350,737	+		Atu1357	0.32	-1.3
1,350,739	+		Atu1357	0.32	-1.0
1,350,740	+		Atu1357	0.32	-1.1
1,350,747	-		Atu1357	0.32	+0.0
1,350,808	+		Atu1357	0.36	-1.0
1,350,841	-		Atu1357	0.39	-1.3
1,350,867	-		Atu1357	0.40	-1.4
1,351,012	+		Atu1357	0.50	-0.9
1,351,020	-		Atu1357	0.51	-0.9
1,351,029	+		Atu1357	0.51	+0.6
1,351,101	-		Atu1357	0.56	-1.1
1,351,204	+		Atu1357	0.63	-0.4
1,351,271	+		Atu1357	0.68	-0.8