Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0977 and Atu0978 are separated by 272 nucleotides Atu0978 and Atu0979 are separated by 9 nucleotides
Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672
Atu0977
Atu0978: Atu0978 - two component response regulator, at 967,945 to 968,703
Atu0978
Atu0979: Atu0979 - two component sensor kinase, at 968,713 to 970,122
Atu0979
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2 at 967.183 kb on + strand, within Atu0977 at 967.265 kb on + strand, within Atu0977 at 967.511 kb on + strand, within Atu0977 at 967.580 kb on - strand at 967.582 kb on + strand at 967.582 kb on + strand at 967.752 kb on - strand at 967.828 kb on + strand at 967.896 kb on - strand at 967.924 kb on - strand at 967.991 kb on + strand at 968.051 kb on + strand, within Atu0978 at 968.059 kb on + strand, within Atu0978 at 968.060 kb on - strand, within Atu0978 at 968.101 kb on + strand, within Atu0978 at 968.144 kb on - strand, within Atu0978 at 968.187 kb on + strand, within Atu0978 at 968.191 kb on - strand, within Atu0978 at 968.234 kb on + strand, within Atu0978 at 968.242 kb on - strand, within Atu0978 at 968.275 kb on + strand, within Atu0978 at 968.347 kb on + strand, within Atu0978 at 968.384 kb on - strand, within Atu0978 at 968.397 kb on + strand, within Atu0978 at 968.405 kb on - strand, within Atu0978 at 968.594 kb on - strand, within Atu0978 at 968.663 kb on - strand at 968.729 kb on - strand at 968.729 kb on - strand at 968.773 kb on - strand at 968.831 kb on - strand at 968.994 kb on - strand, within Atu0979 at 969.132 kb on + strand, within Atu0979 at 969.140 kb on - strand, within Atu0979 at 969.144 kb on + strand, within Atu0979 at 969.236 kb on + strand, within Atu0979 at 969.241 kb on + strand, within Atu0979 at 969.267 kb on + strand, within Atu0979 at 969.390 kb on + strand, within Atu0979 at 969.465 kb on + strand, within Atu0979 at 969.466 kb on - strand, within Atu0979 at 969.490 kb on - strand, within Atu0979 at 969.587 kb on + strand, within Atu0979 at 969.590 kb on + strand, within Atu0979 at 969.600 kb on + strand, within Atu0979 at 969.623 kb on - strand, within Atu0979
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 967,183 + Atu0977 0.69 +1.3 967,265 + Atu0977 0.74 +0.3 967,511 + Atu0977 0.90 -2.1 967,580 - -0.3 967,582 + -1.5 967,582 + -1.3 967,752 - +1.7 967,828 + -0.2 967,896 - -0.4 967,924 - -1.8 967,991 + +0.3 968,051 + Atu0978 0.14 -1.5 968,059 + Atu0978 0.15 -0.7 968,060 - Atu0978 0.15 +0.3 968,101 + Atu0978 0.21 -1.3 968,144 - Atu0978 0.26 -0.3 968,187 + Atu0978 0.32 +0.3 968,191 - Atu0978 0.32 -1.5 968,234 + Atu0978 0.38 -1.7 968,242 - Atu0978 0.39 -0.3 968,275 + Atu0978 0.43 +0.7 968,347 + Atu0978 0.53 +1.0 968,384 - Atu0978 0.58 -0.4 968,397 + Atu0978 0.60 +0.9 968,405 - Atu0978 0.61 -0.5 968,594 - Atu0978 0.86 +0.3 968,663 - +2.3 968,729 - -1.5 968,729 - -2.4 968,773 - +2.0 968,831 - +0.5 968,994 - Atu0979 0.20 -0.3 969,132 + Atu0979 0.30 -0.9 969,140 - Atu0979 0.30 -0.5 969,144 + Atu0979 0.31 -0.7 969,236 + Atu0979 0.37 +1.3 969,241 + Atu0979 0.37 +1.3 969,267 + Atu0979 0.39 +0.7 969,390 + Atu0979 0.48 +1.3 969,465 + Atu0979 0.53 +1.3 969,466 - Atu0979 0.53 -1.0 969,490 - Atu0979 0.55 -0.3 969,587 + Atu0979 0.62 +0.3 969,590 + Atu0979 0.62 +0.1 969,600 + Atu0979 0.63 +0.0 969,623 - Atu0979 0.65 +0.6
Or see this region's nucleotide sequence