Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0975 and Atu0976 overlap by 4 nucleotides Atu0976 and Atu0977 are separated by 153 nucleotides Atu0977 and Atu0978 are separated by 272 nucleotides
Atu0975: Atu0975 - cytochrome c-type synthesis protein, at 963,363 to 965,354
Atu0975
Atu0976: Atu0976 - cycL protein, at 965,351 to 965,947
Atu0976
Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672
Atu0977
Atu0978: Atu0978 - two component response regulator, at 967,945 to 968,703
Atu0978
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1
2 at 965.349 kb on + strand at 965.443 kb on + strand, within Atu0976 at 965.453 kb on + strand, within Atu0976 at 965.488 kb on + strand, within Atu0976 at 966.163 kb on + strand at 966.266 kb on + strand, within Atu0977 at 966.390 kb on + strand, within Atu0977 at 966.550 kb on + strand, within Atu0977 at 966.673 kb on + strand, within Atu0977 at 966.846 kb on + strand, within Atu0977 at 967.183 kb on + strand, within Atu0977 at 967.265 kb on + strand, within Atu0977 at 967.511 kb on + strand, within Atu0977 at 967.580 kb on - strand at 967.582 kb on + strand at 967.582 kb on + strand at 967.752 kb on - strand at 967.828 kb on + strand at 967.896 kb on - strand at 967.924 kb on - strand at 967.991 kb on + strand at 968.051 kb on + strand, within Atu0978 at 968.059 kb on + strand, within Atu0978 at 968.060 kb on - strand, within Atu0978 at 968.101 kb on + strand, within Atu0978 at 968.144 kb on - strand, within Atu0978 at 968.187 kb on + strand, within Atu0978 at 968.191 kb on - strand, within Atu0978 at 968.234 kb on + strand, within Atu0978 at 968.242 kb on - strand, within Atu0978 at 968.275 kb on + strand, within Atu0978 at 968.347 kb on + strand, within Atu0978 at 968.384 kb on - strand, within Atu0978 at 968.397 kb on + strand, within Atu0978 at 968.405 kb on - strand, within Atu0978 at 968.594 kb on - strand, within Atu0978 at 968.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 965,349 + +1.3 965,443 + Atu0976 0.15 +0.0 965,453 + Atu0976 0.17 +0.1 965,488 + Atu0976 0.23 -1.5 966,163 + +1.3 966,266 + Atu0977 0.10 -1.8 966,390 + Atu0977 0.18 +1.3 966,550 + Atu0977 0.29 -0.3 966,673 + Atu0977 0.36 -0.3 966,846 + Atu0977 0.47 -1.5 967,183 + Atu0977 0.69 +1.3 967,265 + Atu0977 0.74 +0.3 967,511 + Atu0977 0.90 -2.1 967,580 - -0.3 967,582 + -1.5 967,582 + -1.3 967,752 - +1.7 967,828 + -0.2 967,896 - -0.4 967,924 - -1.8 967,991 + +0.3 968,051 + Atu0978 0.14 -1.5 968,059 + Atu0978 0.15 -0.7 968,060 - Atu0978 0.15 +0.3 968,101 + Atu0978 0.21 -1.3 968,144 - Atu0978 0.26 -0.3 968,187 + Atu0978 0.32 +0.3 968,191 - Atu0978 0.32 -1.5 968,234 + Atu0978 0.38 -1.7 968,242 - Atu0978 0.39 -0.3 968,275 + Atu0978 0.43 +0.7 968,347 + Atu0978 0.53 +1.0 968,384 - Atu0978 0.58 -0.4 968,397 + Atu0978 0.60 +0.9 968,405 - Atu0978 0.61 -0.5 968,594 - Atu0978 0.86 +0.3 968,663 - +2.3
Or see this region's nucleotide sequence