Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0656 and Atu0657 are separated by 118 nucleotides Atu0657 and Atu0658 are separated by 36 nucleotides
Atu0656: Atu0656 - glutamate-cysteine ligase, at 649,842 to 651,215
Atu0656
Atu0657: Atu0657 - hypothetical protein, at 651,334 to 652,053
Atu0657
Atu0658: Atu0658 - phosphate permease, at 652,090 to 653,595
Atu0658
Position (kb) 651
652
653 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 651.207 kb on - strand at 651.340 kb on - strand at 651.420 kb on + strand, within Atu0657 at 651.435 kb on + strand, within Atu0657 at 651.443 kb on - strand, within Atu0657 at 651.453 kb on - strand, within Atu0657 at 651.593 kb on - strand, within Atu0657 at 651.609 kb on + strand, within Atu0657 at 651.708 kb on - strand, within Atu0657 at 651.712 kb on + strand, within Atu0657 at 651.745 kb on - strand, within Atu0657 at 651.747 kb on + strand, within Atu0657 at 651.755 kb on - strand, within Atu0657 at 651.872 kb on - strand, within Atu0657 at 651.872 kb on - strand, within Atu0657 at 651.894 kb on - strand, within Atu0657 at 651.969 kb on - strand, within Atu0657 at 652.115 kb on + strand at 652.120 kb on - strand at 652.218 kb on + strand at 652.239 kb on - strand at 652.300 kb on + strand, within Atu0658 at 652.312 kb on - strand, within Atu0658 at 652.505 kb on + strand, within Atu0658 at 652.571 kb on + strand, within Atu0658 at 652.594 kb on - strand, within Atu0658 at 652.605 kb on - strand, within Atu0658 at 652.641 kb on + strand, within Atu0658 at 652.651 kb on + strand, within Atu0658 at 652.727 kb on - strand, within Atu0658 at 652.803 kb on - strand, within Atu0658 at 652.978 kb on + strand, within Atu0658 at 652.978 kb on + strand, within Atu0658 at 652.984 kb on - strand, within Atu0658 at 653.007 kb on - strand, within Atu0658 at 653.027 kb on - strand, within Atu0658
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 651,207 - +1.0 651,340 - +0.2 651,420 + Atu0657 0.12 -2.2 651,435 + Atu0657 0.14 -2.3 651,443 - Atu0657 0.15 -1.5 651,453 - Atu0657 0.17 -3.1 651,593 - Atu0657 0.36 -2.0 651,609 + Atu0657 0.38 -0.4 651,708 - Atu0657 0.52 -3.6 651,712 + Atu0657 0.53 -0.2 651,745 - Atu0657 0.57 -2.7 651,747 + Atu0657 0.57 -2.9 651,755 - Atu0657 0.58 -2.3 651,872 - Atu0657 0.75 -1.3 651,872 - Atu0657 0.75 -3.8 651,894 - Atu0657 0.78 -1.6 651,969 - Atu0657 0.88 -4.2 652,115 + -1.0 652,120 - +1.6 652,218 + -1.2 652,239 - -0.5 652,300 + Atu0658 0.14 +1.0 652,312 - Atu0658 0.15 +0.4 652,505 + Atu0658 0.28 -1.4 652,571 + Atu0658 0.32 +0.2 652,594 - Atu0658 0.33 -0.5 652,605 - Atu0658 0.34 +0.9 652,641 + Atu0658 0.37 -1.1 652,651 + Atu0658 0.37 +0.0 652,727 - Atu0658 0.42 -2.0 652,803 - Atu0658 0.47 -1.5 652,978 + Atu0658 0.59 -3.4 652,978 + Atu0658 0.59 +1.4 652,984 - Atu0658 0.59 -1.2 653,007 - Atu0658 0.61 -1.8 653,027 - Atu0658 0.62 -2.1
Or see this region's nucleotide sequence