Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8115 and Atu0043 are separated by 22 nucleotides Atu0043 and Atu0044 are separated by 242 nucleotides Atu0044 and Atu0045 are separated by 87 nucleotides
Atu8115: Atu8115 - Hypothetical Protein, at 43,288 to 43,782
Atu8115
Atu0043: Atu0043 - imidazoleglycerol-phosphate dehydratase, at 43,805 to 44,401
Atu0043
Atu0044: Atu0044 - heat shock protein hslV, at 44,644 to 45,126
Atu0044
Atu0045: Atu0045 - heat shock chaperone, at 45,214 to 46,521
Atu0045
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.675 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.694 kb on + strand, within Atu8115 at 43.796 kb on + strand at 43.817 kb on + strand at 43.942 kb on + strand, within Atu0043 at 44.052 kb on + strand, within Atu0043 at 44.128 kb on + strand, within Atu0043 at 44.128 kb on + strand, within Atu0043 at 44.286 kb on - strand, within Atu0043 at 44.385 kb on + strand at 44.386 kb on - strand at 44.442 kb on - strand at 44.470 kb on - strand at 44.478 kb on - strand at 44.529 kb on + strand at 44.529 kb on + strand at 44.537 kb on - strand at 44.539 kb on + strand at 44.539 kb on + strand at 44.549 kb on + strand at 44.579 kb on - strand at 44.641 kb on - strand at 44.666 kb on + strand at 44.666 kb on + strand at 44.666 kb on + strand at 44.674 kb on - strand at 44.730 kb on - strand, within Atu0044 at 44.762 kb on + strand, within Atu0044 at 44.770 kb on - strand, within Atu0044 at 44.793 kb on + strand, within Atu0044 at 44.827 kb on + strand, within Atu0044 at 44.827 kb on + strand, within Atu0044 at 44.827 kb on + strand, within Atu0044 at 44.835 kb on - strand, within Atu0044 at 44.983 kb on + strand, within Atu0044 at 45.016 kb on + strand, within Atu0044 at 45.088 kb on - strand at 45.089 kb on + strand at 45.097 kb on - strand at 45.129 kb on - strand at 45.160 kb on - strand at 45.296 kb on + strand at 45.296 kb on + strand at 45.296 kb on + strand at 45.304 kb on - strand at 45.312 kb on - strand at 45.450 kb on - strand, within Atu0045 at 45.453 kb on + strand, within Atu0045 at 45.526 kb on - strand, within Atu0045 at 45.576 kb on - strand, within Atu0045 at 45.617 kb on + strand, within Atu0045 at 45.679 kb on + strand, within Atu0045 at 45.679 kb on + strand, within Atu0045 at 45.812 kb on - strand, within Atu0045 at 45.828 kb on + strand, within Atu0045 at 45.836 kb on + strand, within Atu0045 at 45.849 kb on + strand, within Atu0045 at 45.857 kb on - strand, within Atu0045 at 45.857 kb on - strand, within Atu0045 at 46.013 kb on + strand, within Atu0045 at 46.030 kb on + strand, within Atu0045 at 46.088 kb on + strand, within Atu0045 at 46.114 kb on - strand, within Atu0045 at 46.114 kb on - strand, within Atu0045
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 43,668 + Atu8115 0.77 +0.5 43,668 + Atu8115 0.77 -0.3 43,668 + Atu8115 0.77 -0.9 43,668 + Atu8115 0.77 +0.1 43,668 + Atu8115 0.77 +0.4 43,668 + Atu8115 0.77 -0.3 43,675 - Atu8115 0.78 -0.1 43,676 - Atu8115 0.78 -0.6 43,676 - Atu8115 0.78 +0.3 43,676 - Atu8115 0.78 +0.2 43,676 - Atu8115 0.78 +0.2 43,676 - Atu8115 0.78 +1.3 43,694 + Atu8115 0.82 -1.4 43,796 + +0.9 43,817 + -0.4 43,942 + Atu0043 0.23 -1.7 44,052 + Atu0043 0.41 +0.8 44,128 + Atu0043 0.54 +1.4 44,128 + Atu0043 0.54 +0.3 44,286 - Atu0043 0.81 -0.2 44,385 + +1.4 44,386 - +1.4 44,442 - -0.9 44,470 - +0.0 44,478 - +0.1 44,529 + +0.7 44,529 + -0.9 44,537 - -1.3 44,539 + -1.3 44,539 + -0.6 44,549 + -0.2 44,579 - -2.3 44,641 - -2.6 44,666 + +2.4 44,666 + -0.1 44,666 + -2.1 44,674 - +0.4 44,730 - Atu0044 0.18 -0.8 44,762 + Atu0044 0.24 -2.1 44,770 - Atu0044 0.26 -2.3 44,793 + Atu0044 0.31 -0.9 44,827 + Atu0044 0.38 -2.4 44,827 + Atu0044 0.38 -1.8 44,827 + Atu0044 0.38 -2.2 44,835 - Atu0044 0.40 -1.9 44,983 + Atu0044 0.70 -1.1 45,016 + Atu0044 0.77 -1.0 45,088 - -2.1 45,089 + -2.4 45,097 - -2.8 45,129 - -0.0 45,160 - -1.4 45,296 + -1.2 45,296 + -2.9 45,296 + -2.2 45,304 - -2.0 45,312 - -1.7 45,450 - Atu0045 0.18 -2.2 45,453 + Atu0045 0.18 -1.1 45,526 - Atu0045 0.24 -1.5 45,576 - Atu0045 0.28 -1.6 45,617 + Atu0045 0.31 -2.8 45,679 + Atu0045 0.36 -1.0 45,679 + Atu0045 0.36 -2.5 45,812 - Atu0045 0.46 -1.2 45,828 + Atu0045 0.47 -2.5 45,836 + Atu0045 0.48 -1.8 45,849 + Atu0045 0.49 -1.3 45,857 - Atu0045 0.49 -0.2 45,857 - Atu0045 0.49 -0.6 46,013 + Atu0045 0.61 -2.3 46,030 + Atu0045 0.62 -1.5 46,088 + Atu0045 0.67 -0.2 46,114 - Atu0045 0.69 -0.9 46,114 - Atu0045 0.69 -1.1
Or see this region's nucleotide sequence