Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3900 and Atu3901 are separated by 214 nucleotides Atu3901 and Atu3902 are separated by 5 nucleotides
Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900
Atu3900
Atu3901: Atu3901 - nitrite reductase small subunit, at 999,115 to 999,450
Atu3901
Atu3902: Atu3902 - nitrite reductase large subunit, at 999,456 to 1,001,903
Atu3902
Position (kb) 999
1000 Strain fitness (log2 ratio) -1
0
1
2 at 998.143 kb on + strand, within Atu3900 at 998.201 kb on + strand, within Atu3900 at 998.201 kb on + strand, within Atu3900 at 998.209 kb on - strand, within Atu3900 at 998.209 kb on - strand, within Atu3900 at 998.329 kb on + strand, within Atu3900 at 998.337 kb on - strand, within Atu3900 at 998.350 kb on + strand, within Atu3900 at 998.449 kb on - strand, within Atu3900 at 998.489 kb on - strand, within Atu3900 at 998.521 kb on - strand, within Atu3900 at 998.762 kb on - strand at 998.902 kb on + strand at 998.932 kb on + strand at 998.957 kb on + strand at 999.054 kb on + strand at 999.081 kb on + strand at 999.081 kb on + strand at 999.089 kb on - strand at 999.209 kb on - strand, within Atu3901 at 999.209 kb on - strand, within Atu3901 at 999.278 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.363 kb on - strand, within Atu3901 at 999.494 kb on + strand at 999.501 kb on - strand at 999.501 kb on - strand at 999.501 kb on - strand at 999.538 kb on + strand at 999.594 kb on - strand at 999.626 kb on + strand at 999.688 kb on + strand at 999.696 kb on - strand at 999.696 kb on - strand at 999.696 kb on - strand at 999.736 kb on + strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.755 kb on - strand, within Atu3902 at 999.815 kb on - strand, within Atu3902 at 999.849 kb on - strand, within Atu3902 at 999.892 kb on - strand, within Atu3902 at 999.899 kb on + strand, within Atu3902 at 999.946 kb on + strand, within Atu3902 at 999.998 kb on - strand, within Atu3902 at 1000.000 kb on + strand, within Atu3902 at 1000.009 kb on + strand, within Atu3902 at 1000.010 kb on - strand, within Atu3902 at 1000.015 kb on + strand, within Atu3902 at 1000.015 kb on + strand, within Atu3902 at 1000.015 kb on + strand, within Atu3902 at 1000.023 kb on - strand, within Atu3902 at 1000.023 kb on - strand, within Atu3902 at 1000.023 kb on - strand, within Atu3902 at 1000.050 kb on - strand, within Atu3902 at 1000.135 kb on + strand, within Atu3902
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 998,143 + Atu3900 0.71 -0.5 998,201 + Atu3900 0.74 +0.5 998,201 + Atu3900 0.74 +0.1 998,209 - Atu3900 0.74 -0.7 998,209 - Atu3900 0.74 +1.0 998,329 + Atu3900 0.78 +2.2 998,337 - Atu3900 0.79 -0.7 998,350 + Atu3900 0.79 -0.4 998,449 - Atu3900 0.83 +0.3 998,489 - Atu3900 0.84 -0.4 998,521 - Atu3900 0.86 -0.6 998,762 - +0.9 998,902 + -0.1 998,932 + -0.4 998,957 + -0.4 999,054 + -0.1 999,081 + +0.3 999,081 + -0.1 999,089 - -1.3 999,209 - Atu3901 0.28 +0.8 999,209 - Atu3901 0.28 +1.0 999,278 + Atu3901 0.49 -0.7 999,350 + Atu3901 0.70 +0.5 999,350 + Atu3901 0.70 +0.3 999,350 + Atu3901 0.70 +0.3 999,350 + Atu3901 0.70 +0.6 999,363 - Atu3901 0.74 +0.3 999,494 + -0.0 999,501 - +0.2 999,501 - +0.6 999,501 - -0.7 999,538 + +0.4 999,594 - +1.0 999,626 + -0.1 999,688 + -0.3 999,696 - -1.0 999,696 - -0.0 999,696 - +0.1 999,736 + Atu3902 0.11 -0.8 999,744 - Atu3902 0.12 -0.4 999,744 - Atu3902 0.12 +0.6 999,744 - Atu3902 0.12 -1.3 999,755 - Atu3902 0.12 +0.6 999,815 - Atu3902 0.15 +0.4 999,849 - Atu3902 0.16 -1.5 999,892 - Atu3902 0.18 -0.7 999,899 + Atu3902 0.18 -0.5 999,946 + Atu3902 0.20 -0.1 999,998 - Atu3902 0.22 +0.0 1,000,000 + Atu3902 0.22 -0.1 1,000,009 + Atu3902 0.23 -0.3 1,000,010 - Atu3902 0.23 +0.4 1,000,015 + Atu3902 0.23 -0.5 1,000,015 + Atu3902 0.23 -0.3 1,000,015 + Atu3902 0.23 +0.1 1,000,023 - Atu3902 0.23 +0.3 1,000,023 - Atu3902 0.23 -0.7 1,000,023 - Atu3902 0.23 -0.3 1,000,050 - Atu3902 0.24 +0.5 1,000,135 + Atu3902 0.28 +1.2
Or see this region's nucleotide sequence