Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3587 and Atu3588 are separated by 9 nucleotides Atu3588 and Atu3589 are separated by 48 nucleotides Atu3589 and Atu3590 overlap by 33 nucleotides
Atu3587: Atu3587 - transcriptional regulator, at 642,973 to 644,391
Atu3587
Atu3588: Atu3588 - DNA-3-methyladenine glycosidase II, at 644,401 to 645,048
Atu3588
Atu3589: Atu3589 - glutamyl-Q tRNA(Asp) synthetase, at 645,097 to 645,996
Atu3589
Atu3590: Atu3590 - transporter, at 645,964 to 646,881
Atu3590
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1 at 644.110 kb on + strand, within Atu3587 at 644.224 kb on + strand, within Atu3587 at 644.266 kb on + strand at 644.308 kb on - strand at 644.362 kb on + strand at 644.362 kb on + strand at 644.362 kb on + strand at 644.368 kb on - strand at 644.370 kb on - strand at 644.393 kb on - strand at 644.404 kb on + strand at 644.412 kb on - strand at 644.543 kb on - strand, within Atu3588 at 644.610 kb on + strand, within Atu3588 at 644.611 kb on - strand, within Atu3588 at 644.618 kb on - strand, within Atu3588 at 644.661 kb on + strand, within Atu3588 at 644.758 kb on - strand, within Atu3588 at 645.032 kb on - strand at 645.088 kb on + strand at 645.088 kb on + strand at 645.088 kb on + strand at 645.096 kb on - strand at 645.116 kb on - strand at 645.222 kb on + strand, within Atu3589 at 645.286 kb on - strand, within Atu3589 at 645.327 kb on + strand, within Atu3589 at 645.390 kb on - strand, within Atu3589 at 645.401 kb on + strand, within Atu3589 at 645.528 kb on - strand, within Atu3589 at 645.703 kb on + strand, within Atu3589 at 645.706 kb on - strand, within Atu3589 at 645.713 kb on + strand, within Atu3589 at 645.756 kb on - strand, within Atu3589 at 645.776 kb on + strand, within Atu3589 at 645.784 kb on - strand, within Atu3589 at 645.801 kb on + strand, within Atu3589 at 645.804 kb on - strand, within Atu3589 at 645.828 kb on + strand, within Atu3589 at 645.836 kb on - strand, within Atu3589 at 645.838 kb on + strand, within Atu3589 at 645.887 kb on + strand, within Atu3589 at 645.953 kb on + strand at 645.960 kb on - strand at 645.990 kb on + strand at 646.033 kb on - strand at 646.073 kb on + strand, within Atu3590 at 646.134 kb on + strand, within Atu3590 at 646.153 kb on + strand, within Atu3590 at 646.292 kb on - strand, within Atu3590 at 646.438 kb on - strand, within Atu3590 at 646.528 kb on - strand, within Atu3590 at 646.629 kb on - strand, within Atu3590 at 646.629 kb on - strand, within Atu3590 at 646.665 kb on + strand, within Atu3590 at 646.665 kb on + strand, within Atu3590 at 646.673 kb on - strand, within Atu3590 at 646.831 kb on + strand at 646.943 kb on + strand at 646.943 kb on + strand at 646.951 kb on - strand at 646.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 644,110 + Atu3587 0.80 -0.5 644,224 + Atu3587 0.88 -0.1 644,266 + +0.2 644,308 - +0.3 644,362 + +0.9 644,362 + -0.3 644,362 + -0.8 644,368 - +0.3 644,370 - -0.5 644,393 - -0.4 644,404 + -0.0 644,412 - -0.2 644,543 - Atu3588 0.22 +0.1 644,610 + Atu3588 0.32 -0.1 644,611 - Atu3588 0.32 -0.3 644,618 - Atu3588 0.33 -0.3 644,661 + Atu3588 0.40 +0.7 644,758 - Atu3588 0.55 -0.5 645,032 - +0.5 645,088 + -0.6 645,088 + -1.1 645,088 + -0.8 645,096 - +0.2 645,116 - +0.7 645,222 + Atu3589 0.14 -0.1 645,286 - Atu3589 0.21 -0.0 645,327 + Atu3589 0.26 -0.8 645,390 - Atu3589 0.33 -0.8 645,401 + Atu3589 0.34 -1.1 645,528 - Atu3589 0.48 -0.7 645,703 + Atu3589 0.67 -1.7 645,706 - Atu3589 0.68 -0.3 645,713 + Atu3589 0.68 +0.5 645,756 - Atu3589 0.73 +0.1 645,776 + Atu3589 0.75 -0.3 645,784 - Atu3589 0.76 +0.3 645,801 + Atu3589 0.78 +0.1 645,804 - Atu3589 0.79 -0.5 645,828 + Atu3589 0.81 -1.5 645,836 - Atu3589 0.82 -0.8 645,838 + Atu3589 0.82 -0.5 645,887 + Atu3589 0.88 -0.5 645,953 + -0.3 645,960 - -0.1 645,990 + -0.7 646,033 - -0.1 646,073 + Atu3590 0.12 -0.5 646,134 + Atu3590 0.19 -0.1 646,153 + Atu3590 0.21 +0.7 646,292 - Atu3590 0.36 -0.1 646,438 - Atu3590 0.52 +1.2 646,528 - Atu3590 0.61 +0.9 646,629 - Atu3590 0.72 -1.9 646,629 - Atu3590 0.72 +1.0 646,665 + Atu3590 0.76 +0.4 646,665 + Atu3590 0.76 -0.9 646,673 - Atu3590 0.77 -0.6 646,831 + +0.8 646,943 + -1.8 646,943 + -1.4 646,951 - +1.1 646,956 - +0.1
Or see this region's nucleotide sequence