Strain Fitness in Agrobacterium fabrum C58 around Atu2042

Experiment: Streptomycin 200 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Streptomycin 200 ug/mL
1,999,844	+		Atu2040	0.84	+0.5
1,999,863	-		Atu2040	0.87	+0.2
1,999,899	+				-0.8
1,999,923	-				-1.0
2,000,016	+				+0.5
2,000,031	+				-0.4
2,000,211	-		Atu2041	0.41	-0.8
2,000,466	-		Atu2041	0.86	-0.6
2,000,743	+		Atu2042	0.23	-0.8
2,000,744	+		Atu2042	0.23	+0.2
2,000,817	-		Atu2042	0.33	-0.4
2,000,831	-		Atu2042	0.35	-0.4
2,000,885	-		Atu2042	0.42	+0.6
2,000,999	-		Atu2042	0.57	-0.8
2,001,149	-		Atu2042	0.77	-0.2
2,001,191	-		Atu2042	0.83	+0.5
2,001,269	-				+0.0
2,001,349	-				-0.5
2,001,514	-				+1.7
2,001,625	+		Atu2043	0.14	-0.5
2,001,676	-		Atu2043	0.17	+0.1
2,001,699	+		Atu2043	0.19	-1.1
2,001,726	-		Atu2043	0.21	+0.4
2,001,755	-		Atu2043	0.23	-0.1
2,001,787	-		Atu2043	0.25	-0.0
2,001,792	+		Atu2043	0.25	-0.5
2,001,839	-		Atu2043	0.28	-0.3
2,002,067	-		Atu2043	0.43	+1.5
2,002,180	+		Atu2043	0.50	-0.5
2,002,195	+		Atu2043	0.51	-0.1
2,002,203	-		Atu2043	0.52	+0.5
2,002,276	+		Atu2043	0.56	+0.9
2,002,314	-		Atu2043	0.59	-0.9