Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0585 and Atu8132 overlap by 1 nucleotides Atu8132 and Atu0587 are separated by 183 nucleotides Atu0587 and Atu0588 are separated by 127 nucleotides
Atu0585: Atu0585 - hypothetical protein, at 568,556 to 568,924
Atu0585
Atu8132: Atu8132 - hypothetical protein, at 568,924 to 569,457
Atu8132
Atu0587: Atu0587 - teichoic acid biosynthesis protein, at 569,641 to 570,315
Atu0587
Atu0588: Atu0588 - hypothetical protein, at 570,443 to 572,206
Atu0588
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 568.667 kb on - strand, within Atu0585 at 568.762 kb on + strand, within Atu0585 at 568.762 kb on + strand, within Atu0585 at 568.814 kb on + strand, within Atu0585 at 568.895 kb on + strand at 568.898 kb on + strand at 568.976 kb on + strand at 568.980 kb on + strand, within Atu8132 at 568.986 kb on - strand, within Atu8132 at 569.060 kb on - strand, within Atu8132 at 569.142 kb on + strand, within Atu8132 at 569.142 kb on + strand, within Atu8132 at 569.150 kb on - strand, within Atu8132 at 569.186 kb on - strand, within Atu8132 at 569.186 kb on - strand, within Atu8132 at 569.254 kb on + strand, within Atu8132 at 569.268 kb on - strand, within Atu8132 at 569.626 kb on - strand at 569.695 kb on - strand at 569.701 kb on - strand at 569.739 kb on - strand, within Atu0587 at 569.748 kb on + strand, within Atu0587 at 569.773 kb on + strand, within Atu0587 at 569.782 kb on + strand, within Atu0587 at 569.817 kb on + strand, within Atu0587 at 569.820 kb on - strand, within Atu0587 at 569.825 kb on - strand, within Atu0587 at 569.865 kb on + strand, within Atu0587 at 569.958 kb on + strand, within Atu0587 at 569.966 kb on - strand, within Atu0587 at 570.027 kb on - strand, within Atu0587 at 570.101 kb on - strand, within Atu0587 at 570.110 kb on + strand, within Atu0587 at 570.147 kb on + strand, within Atu0587 at 570.187 kb on - strand, within Atu0587 at 570.198 kb on + strand, within Atu0587 at 570.206 kb on - strand, within Atu0587 at 570.265 kb on + strand at 570.348 kb on + strand at 570.398 kb on - strand at 570.445 kb on - strand at 570.446 kb on + strand at 570.637 kb on + strand, within Atu0588 at 570.642 kb on + strand, within Atu0588 at 570.656 kb on + strand, within Atu0588 at 570.664 kb on - strand, within Atu0588 at 570.664 kb on - strand, within Atu0588 at 570.674 kb on - strand, within Atu0588 at 570.800 kb on - strand, within Atu0588 at 570.800 kb on - strand, within Atu0588 at 571.008 kb on + strand, within Atu0588 at 571.030 kb on + strand, within Atu0588 at 571.080 kb on + strand, within Atu0588 at 571.114 kb on - strand, within Atu0588 at 571.118 kb on + strand, within Atu0588 at 571.148 kb on + strand, within Atu0588 at 571.156 kb on - strand, within Atu0588 at 571.199 kb on + strand, within Atu0588
Per-strain Table
Position Strand Gene LocusTag Fraction Streptomycin 200 ug/mL remove 568,667 - Atu0585 0.30 -0.5 568,762 + Atu0585 0.56 +0.1 568,762 + Atu0585 0.56 -0.5 568,814 + Atu0585 0.70 +0.7 568,895 + -0.5 568,898 + -0.9 568,976 + +0.9 568,980 + Atu8132 0.10 +0.5 568,986 - Atu8132 0.12 -0.1 569,060 - Atu8132 0.25 +0.3 569,142 + Atu8132 0.41 +0.6 569,142 + Atu8132 0.41 -0.2 569,150 - Atu8132 0.42 -0.4 569,186 - Atu8132 0.49 -1.0 569,186 - Atu8132 0.49 -0.3 569,254 + Atu8132 0.62 +0.0 569,268 - Atu8132 0.64 -0.4 569,626 - -0.7 569,695 - -0.4 569,701 - -1.1 569,739 - Atu0587 0.15 -1.0 569,748 + Atu0587 0.16 -0.1 569,773 + Atu0587 0.20 -1.0 569,782 + Atu0587 0.21 +0.1 569,817 + Atu0587 0.26 -0.8 569,820 - Atu0587 0.27 -0.7 569,825 - Atu0587 0.27 -0.2 569,865 + Atu0587 0.33 +0.5 569,958 + Atu0587 0.47 -0.6 569,966 - Atu0587 0.48 +0.5 570,027 - Atu0587 0.57 +0.5 570,101 - Atu0587 0.68 -1.4 570,110 + Atu0587 0.69 -1.1 570,147 + Atu0587 0.75 -1.1 570,187 - Atu0587 0.81 -1.0 570,198 + Atu0587 0.83 +0.5 570,206 - Atu0587 0.84 -0.7 570,265 + -0.1 570,348 + +0.0 570,398 - -0.4 570,445 - -0.1 570,446 + +0.3 570,637 + Atu0588 0.11 -0.7 570,642 + Atu0588 0.11 -0.8 570,656 + Atu0588 0.12 -0.8 570,664 - Atu0588 0.13 -0.3 570,664 - Atu0588 0.13 -0.2 570,674 - Atu0588 0.13 +1.9 570,800 - Atu0588 0.20 +1.2 570,800 - Atu0588 0.20 +0.9 571,008 + Atu0588 0.32 -1.8 571,030 + Atu0588 0.33 -0.2 571,080 + Atu0588 0.36 -0.0 571,114 - Atu0588 0.38 +0.2 571,118 + Atu0588 0.38 -0.4 571,148 + Atu0588 0.40 -0.9 571,156 - Atu0588 0.40 +0.1 571,199 + Atu0588 0.43 -1.9
Or see this region's nucleotide sequence