Strain Fitness in Agrobacterium fabrum C58 around Atu3598
Experiment: Timentin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Timentin 6.25 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 651,530 | + | +1.4 | |||
| 651,589 | - | Atu3597 | 0.11 | -0.4 | |
| 651,663 | + | Atu3597 | 0.20 | +0.4 | |
| 651,696 | + | Atu3597 | 0.23 | +0.6 | |
| 651,753 | - | Atu3597 | 0.30 | -0.2 | |
| 651,805 | + | Atu3597 | 0.36 | +0.4 | |
| 651,805 | + | Atu3597 | 0.36 | -0.0 | |
| 651,813 | - | Atu3597 | 0.37 | -0.5 | |
| 651,901 | + | Atu3597 | 0.46 | +2.2 | |
| 652,069 | - | Atu3597 | 0.66 | +0.0 | |
| 652,108 | + | Atu3597 | 0.70 | +0.5 | |
| 652,108 | + | Atu3597 | 0.70 | -0.5 | |
| 652,108 | + | Atu3597 | 0.70 | -0.8 | |
| 652,116 | - | Atu3597 | 0.71 | +3.5 | |
| 652,116 | - | Atu3597 | 0.71 | -0.9 | |
| 652,272 | + | Atu3597 | 0.89 | -0.3 | |
| 652,272 | + | Atu3597 | 0.89 | +0.4 | |
| 652,439 | + | -1.1 | |||
| 652,472 | - | +1.2 | |||
| 652,472 | - | -2.4 | |||
| 652,525 | - | Atu3598 | 0.16 | -0.8 | |
| 652,811 | - | Atu3598 | 0.59 | -1.4 | |
| 652,954 | - | Atu3598 | 0.80 | -1.4 |
Or see this region's nucleotide sequence