Experiment: Timentin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3343 and Atu3344 are separated by 33 nucleotides Atu3344 and Atu3345 overlap by 4 nucleotides Atu3345 and Atu3346 overlap by 1 nucleotides
Atu3343: Atu3343 - trehalose utilization-like protein, at 377,500 to 378,549
Atu3343
Atu3344: Atu3344 - radical activating protein, at 378,583 to 379,338
Atu3344
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Atu3346: Atu3346 - succinoglycan biosynthesis regulator, at 379,691 to 380,401
Atu3346
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 377.618 kb on + strand, within Atu3343 at 377.654 kb on - strand, within Atu3343 at 377.858 kb on - strand, within Atu3343 at 377.894 kb on - strand, within Atu3343 at 377.958 kb on - strand, within Atu3343 at 378.025 kb on + strand, within Atu3343 at 378.075 kb on - strand, within Atu3343 at 378.123 kb on + strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.251 kb on - strand, within Atu3343 at 378.269 kb on + strand, within Atu3343 at 378.273 kb on + strand, within Atu3343 at 378.299 kb on - strand, within Atu3343 at 378.329 kb on + strand, within Atu3343 at 378.514 kb on + strand at 378.602 kb on + strand at 378.602 kb on + strand at 378.602 kb on + strand at 378.670 kb on - strand, within Atu3344 at 378.696 kb on - strand, within Atu3344 at 378.712 kb on - strand, within Atu3344 at 378.764 kb on - strand, within Atu3344 at 378.857 kb on - strand, within Atu3344 at 378.880 kb on + strand, within Atu3344 at 378.882 kb on + strand, within Atu3344 at 379.006 kb on + strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.110 kb on - strand, within Atu3344 at 379.161 kb on - strand, within Atu3344 at 379.189 kb on - strand, within Atu3344 at 379.287 kb on - strand at 379.321 kb on - strand at 379.365 kb on - strand at 379.462 kb on - strand, within Atu3345 at 379.542 kb on + strand, within Atu3345 at 379.595 kb on + strand, within Atu3345 at 379.639 kb on + strand, within Atu3345 at 379.710 kb on + strand at 379.710 kb on + strand at 379.710 kb on + strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.723 kb on - strand at 379.923 kb on - strand, within Atu3346 at 379.923 kb on - strand, within Atu3346 at 379.936 kb on + strand, within Atu3346 at 379.944 kb on - strand, within Atu3346 at 379.960 kb on - strand, within Atu3346 at 379.967 kb on + strand, within Atu3346 at 379.992 kb on + strand, within Atu3346 at 380.080 kb on + strand, within Atu3346 at 380.201 kb on - strand, within Atu3346 at 380.326 kb on - strand, within Atu3346
Per-strain Table
Position Strand Gene LocusTag Fraction Timentin 6.25 ug/mL remove 377,618 + Atu3343 0.11 +1.2 377,654 - Atu3343 0.15 +0.1 377,858 - Atu3343 0.34 -0.5 377,894 - Atu3343 0.38 -0.2 377,958 - Atu3343 0.44 +1.8 378,025 + Atu3343 0.50 +0.1 378,075 - Atu3343 0.55 +0.3 378,123 + Atu3343 0.59 -0.7 378,131 - Atu3343 0.60 +0.2 378,131 - Atu3343 0.60 -0.0 378,251 - Atu3343 0.72 -0.0 378,269 + Atu3343 0.73 -0.2 378,273 + Atu3343 0.74 -2.5 378,299 - Atu3343 0.76 -0.3 378,329 + Atu3343 0.79 -0.1 378,514 + -0.2 378,602 + +0.9 378,602 + +1.0 378,602 + -0.8 378,670 - Atu3344 0.12 -0.2 378,696 - Atu3344 0.15 -0.8 378,712 - Atu3344 0.17 -2.0 378,764 - Atu3344 0.24 +0.2 378,857 - Atu3344 0.36 +0.3 378,880 + Atu3344 0.39 +0.2 378,882 + Atu3344 0.40 +0.1 379,006 + Atu3344 0.56 +0.8 379,014 - Atu3344 0.57 -1.6 379,014 - Atu3344 0.57 -1.3 379,014 - Atu3344 0.57 -0.7 379,110 - Atu3344 0.70 +0.0 379,161 - Atu3344 0.76 -0.7 379,189 - Atu3344 0.80 -0.3 379,287 - -0.6 379,321 - -0.4 379,365 - +0.2 379,462 - Atu3345 0.36 -0.0 379,542 + Atu3345 0.58 +1.0 379,595 + Atu3345 0.73 -0.5 379,639 + Atu3345 0.85 -0.4 379,710 + +0.2 379,710 + -0.5 379,710 + -0.6 379,718 - +0.2 379,718 - +0.5 379,718 - -1.8 379,723 - -0.1 379,923 - Atu3346 0.33 -0.3 379,923 - Atu3346 0.33 -0.1 379,936 + Atu3346 0.34 +0.5 379,944 - Atu3346 0.36 -0.8 379,960 - Atu3346 0.38 -0.3 379,967 + Atu3346 0.39 +0.1 379,992 + Atu3346 0.42 +1.6 380,080 + Atu3346 0.55 -0.4 380,201 - Atu3346 0.72 -0.3 380,326 - Atu3346 0.89 +0.5
Or see this region's nucleotide sequence