Experiment: Timentin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3228 and Atu3229 overlap by 4 nucleotides Atu3229 and Atu3230 are separated by 13 nucleotides Atu3230 and Atu8184 are separated by 157 nucleotides
Atu3228: Atu3228 - DNA polymerase III subunit alpha, at 242,333 to 245,608
Atu3228
Atu3229: Atu3229 - hypothetical protein, at 245,605 to 247,023
Atu3229
Atu3230: Atu3230 - hypothetical protein, at 247,037 to 247,801
Atu3230
Atu8184: Atu8184 - hypothetical protein, at 247,959 to 248,372
Atu8184
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.670 kb on + strand, within Atu3228 at 244.691 kb on - strand, within Atu3228 at 244.759 kb on - strand, within Atu3228 at 244.819 kb on + strand, within Atu3228 at 244.994 kb on + strand, within Atu3228 at 245.009 kb on + strand, within Atu3228 at 245.087 kb on + strand, within Atu3228 at 245.165 kb on - strand, within Atu3228 at 245.197 kb on + strand, within Atu3228 at 245.243 kb on + strand, within Atu3228 at 245.243 kb on + strand, within Atu3228 at 245.243 kb on + strand, within Atu3228 at 245.251 kb on - strand, within Atu3228 at 245.372 kb on - strand at 245.416 kb on - strand at 245.471 kb on - strand at 245.530 kb on + strand at 245.541 kb on - strand at 245.542 kb on + strand at 245.550 kb on - strand at 245.550 kb on - strand at 245.608 kb on + strand at 245.627 kb on + strand at 245.627 kb on + strand at 245.759 kb on + strand, within Atu3229 at 245.845 kb on - strand, within Atu3229 at 245.866 kb on - strand, within Atu3229 at 245.868 kb on + strand, within Atu3229 at 245.875 kb on - strand, within Atu3229 at 245.917 kb on + strand, within Atu3229 at 245.921 kb on + strand, within Atu3229 at 246.069 kb on + strand, within Atu3229 at 246.082 kb on - strand, within Atu3229 at 246.108 kb on + strand, within Atu3229 at 246.187 kb on + strand, within Atu3229 at 246.223 kb on - strand, within Atu3229 at 246.261 kb on - strand, within Atu3229 at 246.371 kb on + strand, within Atu3229 at 246.379 kb on - strand, within Atu3229 at 246.390 kb on + strand, within Atu3229 at 246.411 kb on - strand, within Atu3229 at 246.516 kb on + strand, within Atu3229 at 246.572 kb on - strand, within Atu3229 at 246.629 kb on + strand, within Atu3229 at 246.637 kb on - strand, within Atu3229 at 246.777 kb on + strand, within Atu3229 at 246.787 kb on + strand, within Atu3229 at 246.795 kb on - strand, within Atu3229 at 246.828 kb on + strand, within Atu3229 at 246.867 kb on + strand, within Atu3229 at 246.874 kb on + strand, within Atu3229 at 246.960 kb on + strand at 246.960 kb on + strand at 246.975 kb on - strand at 247.052 kb on + strand at 247.277 kb on - strand, within Atu3230 at 247.287 kb on - strand, within Atu3230 at 247.426 kb on - strand, within Atu3230 at 247.485 kb on + strand, within Atu3230 at 247.528 kb on - strand, within Atu3230 at 247.533 kb on - strand, within Atu3230 at 247.544 kb on + strand, within Atu3230 at 247.552 kb on - strand, within Atu3230 at 247.637 kb on - strand, within Atu3230 at 247.645 kb on + strand, within Atu3230 at 247.731 kb on - strand at 247.742 kb on - strand at 247.870 kb on + strand at 247.899 kb on - strand at 248.010 kb on - strand, within Atu8184
Per-strain Table
Position Strand Gene LocusTag Fraction Timentin 6.25 ug/mL remove 244,670 + Atu3228 0.71 -0.1 244,691 - Atu3228 0.72 -0.4 244,759 - Atu3228 0.74 -0.6 244,819 + Atu3228 0.76 -1.4 244,994 + Atu3228 0.81 +0.0 245,009 + Atu3228 0.82 -0.1 245,087 + Atu3228 0.84 -0.1 245,165 - Atu3228 0.86 +0.1 245,197 + Atu3228 0.87 +0.1 245,243 + Atu3228 0.89 +0.1 245,243 + Atu3228 0.89 -0.5 245,243 + Atu3228 0.89 -0.5 245,251 - Atu3228 0.89 +0.8 245,372 - +0.7 245,416 - -0.7 245,471 - +0.4 245,530 + -0.4 245,541 - +0.1 245,542 + -0.2 245,550 - -1.1 245,550 - +0.0 245,608 + -0.1 245,627 + -1.0 245,627 + -1.1 245,759 + Atu3229 0.11 +0.6 245,845 - Atu3229 0.17 -0.3 245,866 - Atu3229 0.18 +0.7 245,868 + Atu3229 0.19 +0.4 245,875 - Atu3229 0.19 -0.5 245,917 + Atu3229 0.22 +0.7 245,921 + Atu3229 0.22 -0.3 246,069 + Atu3229 0.33 -0.4 246,082 - Atu3229 0.34 -0.1 246,108 + Atu3229 0.35 +0.5 246,187 + Atu3229 0.41 -0.2 246,223 - Atu3229 0.44 +0.6 246,261 - Atu3229 0.46 -0.2 246,371 + Atu3229 0.54 -0.2 246,379 - Atu3229 0.55 +0.3 246,390 + Atu3229 0.55 +0.0 246,411 - Atu3229 0.57 -0.4 246,516 + Atu3229 0.64 +0.5 246,572 - Atu3229 0.68 -0.7 246,629 + Atu3229 0.72 -0.4 246,637 - Atu3229 0.73 +0.2 246,777 + Atu3229 0.83 +0.4 246,787 + Atu3229 0.83 -0.4 246,795 - Atu3229 0.84 +0.2 246,828 + Atu3229 0.86 -0.4 246,867 + Atu3229 0.89 +0.0 246,874 + Atu3229 0.89 +0.8 246,960 + -0.4 246,960 + +0.0 246,975 - +0.6 247,052 + +1.6 247,277 - Atu3230 0.31 +0.5 247,287 - Atu3230 0.33 +0.1 247,426 - Atu3230 0.51 +1.8 247,485 + Atu3230 0.59 -0.3 247,528 - Atu3230 0.64 +1.2 247,533 - Atu3230 0.65 +0.1 247,544 + Atu3230 0.66 +0.2 247,552 - Atu3230 0.67 +1.2 247,637 - Atu3230 0.78 +0.5 247,645 + Atu3230 0.79 +1.2 247,731 - +0.0 247,742 - -0.2 247,870 + -3.2 247,899 - -0.1 248,010 - Atu8184 0.12 +2.2
Or see this region's nucleotide sequence