Experiment: Timentin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0116 and Atu0117 are separated by 99 nucleotides Atu0117 and Atu0118 are separated by 9 nucleotides
Atu0116: Atu0116 - hypothetical protein, at 121,502 to 121,912
Atu0116
Atu0117: Atu0117 - hypothetical protein, at 122,012 to 122,473
Atu0117
Atu0118: Atu0118 - hypothetical protein, at 122,483 to 123,988
Atu0118
Position (kb) 122
123 Strain fitness (log2 ratio) -1
0
1 at 121.034 kb on + strand at 121.063 kb on + strand at 121.104 kb on + strand at 121.191 kb on + strand at 121.191 kb on + strand at 121.199 kb on - strand at 121.199 kb on - strand at 121.260 kb on - strand at 121.363 kb on - strand at 121.381 kb on + strand at 121.381 kb on + strand at 121.426 kb on - strand at 121.466 kb on - strand at 121.476 kb on - strand at 121.499 kb on + strand at 121.507 kb on - strand at 121.525 kb on + strand at 121.565 kb on - strand, within Atu0116 at 121.581 kb on - strand, within Atu0116 at 121.677 kb on + strand, within Atu0116 at 121.713 kb on - strand, within Atu0116 at 121.735 kb on + strand, within Atu0116 at 121.743 kb on - strand, within Atu0116 at 121.771 kb on - strand, within Atu0116 at 121.986 kb on - strand at 122.100 kb on - strand, within Atu0117 at 122.216 kb on + strand, within Atu0117 at 122.221 kb on + strand, within Atu0117 at 122.303 kb on - strand, within Atu0117 at 122.340 kb on + strand, within Atu0117 at 122.355 kb on + strand, within Atu0117 at 122.492 kb on - strand at 122.616 kb on + strand at 122.728 kb on + strand, within Atu0118 at 122.733 kb on - strand, within Atu0118 at 122.791 kb on + strand, within Atu0118 at 122.943 kb on + strand, within Atu0118 at 122.992 kb on + strand, within Atu0118 at 122.995 kb on - strand, within Atu0118 at 123.000 kb on - strand, within Atu0118 at 123.011 kb on - strand, within Atu0118 at 123.029 kb on - strand, within Atu0118 at 123.148 kb on + strand, within Atu0118 at 123.168 kb on + strand, within Atu0118 at 123.168 kb on + strand, within Atu0118 at 123.168 kb on + strand, within Atu0118 at 123.173 kb on + strand, within Atu0118 at 123.176 kb on - strand, within Atu0118 at 123.195 kb on + strand, within Atu0118 at 123.234 kb on + strand, within Atu0118 at 123.234 kb on + strand, within Atu0118 at 123.234 kb on + strand, within Atu0118 at 123.261 kb on + strand, within Atu0118 at 123.261 kb on + strand, within Atu0118 at 123.269 kb on - strand, within Atu0118 at 123.269 kb on - strand, within Atu0118 at 123.313 kb on + strand, within Atu0118 at 123.321 kb on - strand, within Atu0118 at 123.423 kb on + strand, within Atu0118
Per-strain Table
Position Strand Gene LocusTag Fraction Timentin 6.25 ug/mL remove 121,034 + -0.3 121,063 + -0.3 121,104 + -0.1 121,191 + +0.9 121,191 + -1.0 121,199 - -0.8 121,199 - -0.2 121,260 - +1.2 121,363 - +0.3 121,381 + -1.7 121,381 + +0.6 121,426 - +0.8 121,466 - +0.5 121,476 - +0.4 121,499 + -0.4 121,507 - +0.2 121,525 + -0.2 121,565 - Atu0116 0.15 -0.3 121,581 - Atu0116 0.19 +0.1 121,677 + Atu0116 0.43 +0.1 121,713 - Atu0116 0.51 +0.0 121,735 + Atu0116 0.57 -0.4 121,743 - Atu0116 0.59 +0.2 121,771 - Atu0116 0.65 -0.6 121,986 - +0.4 122,100 - Atu0117 0.19 +1.0 122,216 + Atu0117 0.44 -0.3 122,221 + Atu0117 0.45 +0.8 122,303 - Atu0117 0.63 +0.7 122,340 + Atu0117 0.71 -0.2 122,355 + Atu0117 0.74 +1.0 122,492 - -0.1 122,616 + -0.9 122,728 + Atu0118 0.16 +0.9 122,733 - Atu0118 0.17 +1.1 122,791 + Atu0118 0.20 -0.2 122,943 + Atu0118 0.31 -1.4 122,992 + Atu0118 0.34 +0.0 122,995 - Atu0118 0.34 +0.4 123,000 - Atu0118 0.34 -0.9 123,011 - Atu0118 0.35 -0.9 123,029 - Atu0118 0.36 -0.4 123,148 + Atu0118 0.44 -0.6 123,168 + Atu0118 0.45 +0.2 123,168 + Atu0118 0.45 -0.2 123,168 + Atu0118 0.45 -0.1 123,173 + Atu0118 0.46 -0.1 123,176 - Atu0118 0.46 +0.6 123,195 + Atu0118 0.47 -0.3 123,234 + Atu0118 0.50 +1.0 123,234 + Atu0118 0.50 +0.6 123,234 + Atu0118 0.50 -0.2 123,261 + Atu0118 0.52 -0.1 123,261 + Atu0118 0.52 +0.6 123,269 - Atu0118 0.52 +0.1 123,269 - Atu0118 0.52 +0.1 123,313 + Atu0118 0.55 -0.1 123,321 - Atu0118 0.56 +0.2 123,423 + Atu0118 0.62 +0.6
Or see this region's nucleotide sequence