Experiment: Timentin 3.125 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3230 and Atu8184 are separated by 157 nucleotides Atu8184 and Atu3232 overlap by 4 nucleotides Atu3232 and Atu8185 are separated by 104 nucleotides Atu8185 and Atu3234 are separated by 111 nucleotides
Atu3230: Atu3230 - hypothetical protein, at 247,037 to 247,801
Atu3230
Atu8184: Atu8184 - hypothetical protein, at 247,959 to 248,372
Atu8184
Atu3232: Atu3232 - hydroxypyruvate reductase, at 248,369 to 249,649
Atu3232
Atu8185: Atu8185 - hypothetical protein, at 249,754 to 250,017
Atu8185
Atu3234: Atu3234 - NAD binding oxidoreductase, at 250,129 to 251,316
Atu3234
Position (kb)
248
249
250 Strain fitness (log2 ratio)
-1
0
1
2
3 at 247.426 kb on - strand, within Atu3230 at 247.485 kb on + strand, within Atu3230 at 247.528 kb on - strand, within Atu3230 at 247.533 kb on - strand, within Atu3230 at 247.544 kb on + strand, within Atu3230 at 247.552 kb on - strand, within Atu3230 at 247.637 kb on - strand, within Atu3230 at 247.645 kb on + strand, within Atu3230 at 247.731 kb on - strand at 247.742 kb on - strand at 247.870 kb on + strand at 247.899 kb on - strand at 248.010 kb on - strand, within Atu8184 at 248.180 kb on - strand, within Atu8184 at 248.212 kb on + strand, within Atu8184 at 248.240 kb on - strand, within Atu8184 at 248.266 kb on - strand, within Atu8184 at 248.342 kb on - strand at 248.392 kb on - strand at 248.487 kb on + strand at 248.583 kb on + strand, within Atu3232 at 248.791 kb on - strand, within Atu3232 at 248.881 kb on + strand, within Atu3232 at 248.881 kb on + strand, within Atu3232 at 248.889 kb on - strand, within Atu3232 at 248.925 kb on - strand, within Atu3232 at 248.964 kb on + strand, within Atu3232 at 249.045 kb on - strand, within Atu3232 at 249.082 kb on + strand, within Atu3232 at 249.164 kb on + strand, within Atu3232 at 249.289 kb on + strand, within Atu3232 at 249.310 kb on + strand, within Atu3232 at 249.398 kb on - strand, within Atu3232 at 249.457 kb on - strand, within Atu3232 at 249.552 kb on - strand at 249.693 kb on + strand at 249.781 kb on - strand, within Atu8185 at 249.781 kb on - strand, within Atu8185 at 249.781 kb on - strand, within Atu8185 at 249.813 kb on - strand, within Atu8185 at 250.083 kb on - strand at 250.201 kb on - strand at 250.229 kb on + strand at 250.229 kb on + strand at 250.230 kb on + strand at 250.283 kb on + strand, within Atu3234 at 250.291 kb on - strand, within Atu3234 at 250.291 kb on - strand, within Atu3234 at 250.520 kb on - strand, within Atu3234 at 250.522 kb on + strand, within Atu3234 at 250.612 kb on + strand, within Atu3234 at 250.620 kb on - strand, within Atu3234
Per-strain Table
Position Strand Gene LocusTag Fraction Timentin 3.125 ug/mL remove 247,426 - Atu3230 0.51 +0.2 247,485 + Atu3230 0.59 -0.7 247,528 - Atu3230 0.64 +2.2 247,533 - Atu3230 0.65 -0.3 247,544 + Atu3230 0.66 +0.7 247,552 - Atu3230 0.67 -0.1 247,637 - Atu3230 0.78 -0.8 247,645 + Atu3230 0.79 +2.2 247,731 - -0.1 247,742 - +0.5 247,870 + -0.2 247,899 - +0.5 248,010 - Atu8184 0.12 +1.2 248,180 - Atu8184 0.53 -0.4 248,212 + Atu8184 0.61 +1.7 248,240 - Atu8184 0.68 -0.5 248,266 - Atu8184 0.74 -0.2 248,342 - +0.3 248,392 - -0.4 248,487 + +0.6 248,583 + Atu3232 0.17 -0.4 248,791 - Atu3232 0.33 -0.7 248,881 + Atu3232 0.40 +0.1 248,881 + Atu3232 0.40 -1.4 248,889 - Atu3232 0.41 -0.1 248,925 - Atu3232 0.43 -0.1 248,964 + Atu3232 0.46 +0.0 249,045 - Atu3232 0.53 -0.1 249,082 + Atu3232 0.56 +3.2 249,164 + Atu3232 0.62 -0.8 249,289 + Atu3232 0.72 +0.3 249,310 + Atu3232 0.73 +0.5 249,398 - Atu3232 0.80 +0.4 249,457 - Atu3232 0.85 +0.2 249,552 - -0.3 249,693 + +1.2 249,781 - Atu8185 0.10 -0.3 249,781 - Atu8185 0.10 +1.2 249,781 - Atu8185 0.10 +1.0 249,813 - Atu8185 0.22 -0.2 250,083 - +0.1 250,201 - +0.5 250,229 + +0.1 250,229 + +0.3 250,230 + -0.4 250,283 + Atu3234 0.13 -0.3 250,291 - Atu3234 0.14 +0.2 250,291 - Atu3234 0.14 -0.2 250,520 - Atu3234 0.33 -0.1 250,522 + Atu3234 0.33 +0.2 250,612 + Atu3234 0.41 +0.7 250,620 - Atu3234 0.41 -1.1
Or see this region's nucleotide sequence