Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5187 and Atu5188 are separated by 194 nucleotides Atu5188 and Atu5189 overlap by 4 nucleotides Atu5189 and Atu5190 are separated by 114 nucleotides
Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902
Atu5187
Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083
Atu5188
Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412
Atu5189
Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249
Atu5190
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.113 kb on + strand, within Atu5187 at 183.124 kb on - strand, within Atu5187 at 183.195 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.238 kb on + strand, within Atu5187 at 183.244 kb on - strand, within Atu5187 at 183.246 kb on - strand, within Atu5187 at 183.345 kb on - strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.471 kb on + strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.509 kb on + strand, within Atu5187 at 183.554 kb on - strand, within Atu5187 at 183.567 kb on - strand, within Atu5187 at 183.630 kb on + strand, within Atu5187 at 183.714 kb on + strand, within Atu5187 at 183.800 kb on - strand, within Atu5187 at 183.824 kb on + strand at 183.839 kb on + strand at 183.839 kb on + strand at 183.860 kb on + strand at 183.866 kb on - strand at 183.881 kb on + strand at 184.128 kb on + strand at 184.128 kb on + strand at 184.136 kb on - strand at 184.137 kb on + strand at 184.203 kb on - strand, within Atu5188 at 184.203 kb on - strand, within Atu5188 at 184.281 kb on + strand, within Atu5188 at 184.297 kb on - strand, within Atu5188 at 184.361 kb on + strand, within Atu5188 at 184.369 kb on - strand, within Atu5188 at 184.514 kb on + strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.568 kb on - strand, within Atu5188 at 184.599 kb on + strand, within Atu5188 at 184.606 kb on + strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.736 kb on - strand, within Atu5188 at 184.764 kb on + strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 185.000 kb on - strand at 185.064 kb on + strand at 185.093 kb on + strand at 185.130 kb on + strand, within Atu5189 at 185.161 kb on - strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.169 kb on - strand, within Atu5189 at 185.171 kb on - strand, within Atu5189 at 185.178 kb on + strand, within Atu5189 at 185.221 kb on + strand, within Atu5189 at 185.235 kb on + strand, within Atu5189 at 185.243 kb on - strand, within Atu5189 at 185.291 kb on + strand, within Atu5189 at 185.314 kb on + strand, within Atu5189 at 185.415 kb on - strand at 185.415 kb on - strand at 185.461 kb on + strand at 185.531 kb on + strand at 185.536 kb on + strand at 185.539 kb on - strand at 185.544 kb on - strand at 185.579 kb on - strand at 185.660 kb on + strand, within Atu5190 at 185.728 kb on - strand, within Atu5190 at 185.751 kb on + strand, within Atu5190 at 185.765 kb on + strand, within Atu5190 at 185.841 kb on + strand, within Atu5190 at 185.864 kb on - strand, within Atu5190 at 185.875 kb on - strand, within Atu5190 at 185.888 kb on + strand, within Atu5190 at 186.020 kb on - strand, within Atu5190 at 186.057 kb on + strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.060 kb on - strand, within Atu5190
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 183,113 + Atu5187 0.15 -0.4 183,124 - Atu5187 0.16 -2.8 183,195 + Atu5187 0.24 +1.3 183,236 + Atu5187 0.28 +0.6 183,236 + Atu5187 0.28 +2.7 183,238 + Atu5187 0.28 +0.2 183,244 - Atu5187 0.29 +1.0 183,246 - Atu5187 0.29 +0.4 183,345 - Atu5187 0.40 -1.0 183,469 + Atu5187 0.53 -0.4 183,469 + Atu5187 0.53 -1.1 183,471 + Atu5187 0.53 -1.4 183,472 - Atu5187 0.54 -0.2 183,472 - Atu5187 0.54 -0.3 183,509 + Atu5187 0.57 +2.9 183,554 - Atu5187 0.62 +0.5 183,567 - Atu5187 0.64 -0.3 183,630 + Atu5187 0.71 -1.3 183,714 + Atu5187 0.80 +1.3 183,800 - Atu5187 0.89 +0.8 183,824 + -1.2 183,839 + -0.0 183,839 + -1.4 183,860 + -1.6 183,866 - +0.6 183,881 + -1.2 184,128 + -0.1 184,128 + -1.8 184,136 - +0.4 184,137 + +1.0 184,203 - Atu5188 0.11 -0.7 184,203 - Atu5188 0.11 -0.6 184,281 + Atu5188 0.19 -2.1 184,297 - Atu5188 0.20 -0.4 184,361 + Atu5188 0.27 +0.6 184,369 - Atu5188 0.28 -0.0 184,514 + Atu5188 0.42 -2.7 184,522 - Atu5188 0.43 -0.7 184,522 - Atu5188 0.43 -0.5 184,522 - Atu5188 0.43 +0.4 184,522 - Atu5188 0.43 -0.0 184,568 - Atu5188 0.48 -0.4 184,599 + Atu5188 0.51 -1.4 184,606 + Atu5188 0.52 +0.6 184,607 - Atu5188 0.52 -0.9 184,607 - Atu5188 0.52 -0.0 184,736 - Atu5188 0.65 -1.1 184,764 + Atu5188 0.68 -1.0 184,784 - Atu5188 0.70 -2.6 184,784 - Atu5188 0.70 -0.4 184,897 - Atu5188 0.81 -1.4 184,897 - Atu5188 0.81 -0.7 185,000 - +0.6 185,064 + -0.0 185,093 + -1.0 185,130 + Atu5189 0.15 -2.9 185,161 - Atu5189 0.24 -0.2 185,163 + Atu5189 0.25 -0.1 185,163 + Atu5189 0.25 +0.6 185,163 + Atu5189 0.25 +0.6 185,163 + Atu5189 0.25 +0.1 185,163 + Atu5189 0.25 +0.4 185,169 - Atu5189 0.27 +0.0 185,171 - Atu5189 0.27 +0.8 185,178 + Atu5189 0.29 +0.3 185,221 + Atu5189 0.42 +1.3 185,235 + Atu5189 0.47 -2.3 185,243 - Atu5189 0.49 -1.9 185,291 + Atu5189 0.63 +1.3 185,314 + Atu5189 0.70 -0.8 185,415 - -0.1 185,415 - +1.1 185,461 + -0.4 185,531 + -0.1 185,536 + +1.6 185,539 - -1.3 185,544 - +0.1 185,579 - -0.9 185,660 + Atu5190 0.18 -1.0 185,728 - Atu5190 0.28 +0.5 185,751 + Atu5190 0.31 -0.8 185,765 + Atu5190 0.33 +0.2 185,841 + Atu5190 0.43 -0.1 185,864 - Atu5190 0.47 +0.3 185,875 - Atu5190 0.48 -1.9 185,888 + Atu5190 0.50 +0.3 186,020 - Atu5190 0.68 +1.6 186,057 + Atu5190 0.73 +1.3 186,060 - Atu5190 0.74 -2.1 186,060 - Atu5190 0.74 +0.9
Or see this region's nucleotide sequence