Strain Fitness in Agrobacterium fabrum C58 around Atu5074

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5072 and Atu5073 are separated by 3 nucleotidesAtu5073 and Atu5074 overlap by 4 nucleotidesAtu5074 and Atu5075 are separated by 60 nucleotidesAtu5075 and Atu5076 are separated by 3 nucleotides Atu5072: Atu5072 - hypothetical protein, at 71,901 to 73,091 Atu5072 Atu5073: Atu5073 - pyridoxal phosphate biosynthesis protein, at 73,095 to 74,060 Atu5073 Atu5074: Atu5074 - iron alcohol dehydrogenase, at 74,057 to 75,178 Atu5074 Atu5075: Atu5075 - GntR family transcriptional regulator, at 75,239 to 75,943 Atu5075 Atu5076: Atu5076 - hypothetical protein, at 75,947 to 76,975 Atu5076 Position (kb) 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 73.123 kb on - strandat 73.129 kb on - strandat 73.222 kb on + strand, within Atu5073at 73.222 kb on - strand, within Atu5073at 73.224 kb on - strand, within Atu5073at 73.312 kb on + strand, within Atu5073at 73.320 kb on - strand, within Atu5073at 73.396 kb on + strand, within Atu5073at 73.396 kb on + strand, within Atu5073at 73.478 kb on - strand, within Atu5073at 73.484 kb on + strand, within Atu5073at 73.526 kb on + strand, within Atu5073at 73.532 kb on + strand, within Atu5073at 73.532 kb on + strand, within Atu5073at 73.542 kb on - strand, within Atu5073at 73.585 kb on + strand, within Atu5073at 73.616 kb on + strand, within Atu5073at 73.649 kb on - strand, within Atu5073at 73.649 kb on - strand, within Atu5073at 73.713 kb on + strand, within Atu5073at 73.784 kb on - strand, within Atu5073at 73.805 kb on - strand, within Atu5073at 73.822 kb on + strand, within Atu5073at 73.827 kb on + strand, within Atu5073at 73.832 kb on + strand, within Atu5073at 73.893 kb on + strand, within Atu5073at 73.911 kb on + strand, within Atu5073at 73.950 kb on + strand, within Atu5073at 73.958 kb on - strand, within Atu5073at 73.958 kb on - strand, within Atu5073at 73.958 kb on - strand, within Atu5073at 73.965 kb on + strandat 74.054 kb on + strandat 74.088 kb on + strandat 74.149 kb on + strandat 74.164 kb on + strandat 74.238 kb on - strand, within Atu5074at 74.244 kb on - strand, within Atu5074at 74.250 kb on + strand, within Atu5074at 74.393 kb on - strand, within Atu5074at 74.402 kb on + strand, within Atu5074at 74.410 kb on - strand, within Atu5074at 74.435 kb on - strand, within Atu5074at 74.558 kb on + strand, within Atu5074at 74.583 kb on - strand, within Atu5074at 74.596 kb on + strand, within Atu5074at 74.635 kb on + strand, within Atu5074at 74.642 kb on - strand, within Atu5074at 74.650 kb on - strand, within Atu5074at 74.693 kb on + strand, within Atu5074at 74.693 kb on + strand, within Atu5074at 74.693 kb on + strand, within Atu5074at 74.729 kb on + strand, within Atu5074at 74.737 kb on - strand, within Atu5074at 74.737 kb on - strand, within Atu5074at 74.762 kb on + strand, within Atu5074at 74.804 kb on - strand, within Atu5074at 74.804 kb on - strand, within Atu5074at 74.804 kb on - strand, within Atu5074at 74.806 kb on + strand, within Atu5074at 74.852 kb on + strand, within Atu5074at 74.860 kb on - strand, within Atu5074at 74.860 kb on - strand, within Atu5074at 74.917 kb on + strand, within Atu5074at 74.967 kb on + strand, within Atu5074at 74.972 kb on + strand, within Atu5074at 74.995 kb on - strand, within Atu5074at 75.084 kb on - strandat 75.086 kb on + strandat 75.180 kb on - strandat 75.183 kb on + strandat 75.183 kb on + strandat 75.204 kb on - strandat 75.204 kb on - strandat 75.322 kb on - strand, within Atu5075at 75.368 kb on + strand, within Atu5075at 75.376 kb on - strand, within Atu5075at 75.392 kb on + strand, within Atu5075at 75.400 kb on - strand, within Atu5075at 75.467 kb on + strand, within Atu5075at 75.469 kb on + strand, within Atu5075at 75.472 kb on + strand, within Atu5075at 75.545 kb on + strand, within Atu5075at 75.574 kb on + strand, within Atu5075at 75.606 kb on - strand, within Atu5075at 75.765 kb on + strand, within Atu5075at 75.771 kb on + strand, within Atu5075at 75.797 kb on + strand, within Atu5075at 75.805 kb on + strand, within Atu5075at 75.812 kb on - strand, within Atu5075at 75.918 kb on - strandat 76.008 kb on - strandat 76.065 kb on - strand, within Atu5076at 76.074 kb on - strand, within Atu5076at 76.090 kb on + strand, within Atu5076at 76.096 kb on + strand, within Atu5076at 76.102 kb on + strand, within Atu5076at 76.102 kb on + strand, within Atu5076at 76.110 kb on - strand, within Atu5076at 76.114 kb on - strand, within Atu5076at 76.139 kb on + strand, within Atu5076at 76.175 kb on + strand, within Atu5076

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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73,123 - -0.0
73,129 - -0.8
73,222 + Atu5073 0.13 -0.4
73,222 - Atu5073 0.13 +0.5
73,224 - Atu5073 0.13 -0.6
73,312 + Atu5073 0.22 -0.4
73,320 - Atu5073 0.23 +0.1
73,396 + Atu5073 0.31 -1.4
73,396 + Atu5073 0.31 +0.6
73,478 - Atu5073 0.40 +0.5
73,484 + Atu5073 0.40 -1.8
73,526 + Atu5073 0.45 -1.1
73,532 + Atu5073 0.45 +0.3
73,532 + Atu5073 0.45 -1.0
73,542 - Atu5073 0.46 +1.1
73,585 + Atu5073 0.51 -1.0
73,616 + Atu5073 0.54 -0.4
73,649 - Atu5073 0.57 -1.7
73,649 - Atu5073 0.57 -0.5
73,713 + Atu5073 0.64 -1.4
73,784 - Atu5073 0.71 +0.3
73,805 - Atu5073 0.73 -0.7
73,822 + Atu5073 0.75 +0.3
73,827 + Atu5073 0.76 +0.9
73,832 + Atu5073 0.76 -1.1
73,893 + Atu5073 0.83 -1.1
73,911 + Atu5073 0.84 -1.1
73,950 + Atu5073 0.89 +0.2
73,958 - Atu5073 0.89 -2.4
73,958 - Atu5073 0.89 -1.3
73,958 - Atu5073 0.89 -0.9
73,965 + +0.4
74,054 + +0.2
74,088 + -0.5
74,149 + -0.0
74,164 + +1.1
74,238 - Atu5074 0.16 -0.7
74,244 - Atu5074 0.17 +0.2
74,250 + Atu5074 0.17 -2.2
74,393 - Atu5074 0.30 +0.0
74,402 + Atu5074 0.31 +0.2
74,410 - Atu5074 0.31 -1.2
74,435 - Atu5074 0.34 +2.6
74,558 + Atu5074 0.45 -2.5
74,583 - Atu5074 0.47 -0.3
74,596 + Atu5074 0.48 -0.1
74,635 + Atu5074 0.52 -0.0
74,642 - Atu5074 0.52 -0.4
74,650 - Atu5074 0.53 -2.7
74,693 + Atu5074 0.57 +1.3
74,693 + Atu5074 0.57 +1.4
74,693 + Atu5074 0.57 +0.0
74,729 + Atu5074 0.60 +0.3
74,737 - Atu5074 0.61 -1.4
74,737 - Atu5074 0.61 -1.9
74,762 + Atu5074 0.63 +1.3
74,804 - Atu5074 0.67 -0.1
74,804 - Atu5074 0.67 -0.4
74,804 - Atu5074 0.67 -1.5
74,806 + Atu5074 0.67 +0.0
74,852 + Atu5074 0.71 +2.6
74,860 - Atu5074 0.72 -0.0
74,860 - Atu5074 0.72 -1.3
74,917 + Atu5074 0.77 +0.2
74,967 + Atu5074 0.81 -0.7
74,972 + Atu5074 0.82 -1.3
74,995 - Atu5074 0.84 -0.4
75,084 - -0.4
75,086 + -0.1
75,180 - +0.9
75,183 + -1.6
75,183 + -1.6
75,204 - +0.6
75,204 - -1.4
75,322 - Atu5075 0.12 -0.3
75,368 + Atu5075 0.18 -1.4
75,376 - Atu5075 0.19 -1.2
75,392 + Atu5075 0.22 -1.3
75,400 - Atu5075 0.23 +0.2
75,467 + Atu5075 0.32 -0.9
75,469 + Atu5075 0.33 +1.6
75,472 + Atu5075 0.33 +0.8
75,545 + Atu5075 0.43 -2.8
75,574 + Atu5075 0.48 +0.0
75,606 - Atu5075 0.52 -0.1
75,765 + Atu5075 0.75 -0.7
75,771 + Atu5075 0.75 -0.0
75,797 + Atu5075 0.79 -0.1
75,805 + Atu5075 0.80 +2.3
75,812 - Atu5075 0.81 +1.0
75,918 - -0.1
76,008 - +1.6
76,065 - Atu5076 0.11 -0.4
76,074 - Atu5076 0.12 +0.2
76,090 + Atu5076 0.14 -0.4
76,096 + Atu5076 0.14 +0.6
76,102 + Atu5076 0.15 +0.9
76,102 + Atu5076 0.15 +0.2
76,110 - Atu5076 0.16 -1.3
76,114 - Atu5076 0.16 -0.2
76,139 + Atu5076 0.19 -0.2
76,175 + Atu5076 0.22 +0.8

Or see this region's nucleotide sequence