Strain Fitness in Agrobacterium fabrum C58 around Atu4312

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,436,667	-		Atu4310	0.51	+1.1
1,436,814	+		Atu4310	0.63	+0.7
1,436,864	+		Atu4310	0.67	-0.4
1,436,921	+		Atu4310	0.72	-1.3
1,436,921	+		Atu4310	0.72	+0.1
1,436,921	+		Atu4310	0.72	+0.7
1,436,921	+		Atu4310	0.72	-0.5
1,436,921	+		Atu4310	0.72	+0.7
1,436,929	-		Atu4310	0.72	+1.5
1,436,931	-		Atu4310	0.72	+0.3
1,436,939	-		Atu4310	0.73	+0.5
1,437,033	-		Atu4310	0.80	-0.4
1,437,049	+		Atu4310	0.82	-1.1
1,437,070	-		Atu4310	0.83	-0.1
1,437,082	+		Atu4310	0.84	-0.8
1,437,152	+				+0.5
1,437,152	+				-0.4
1,437,152	+				+0.8
1,437,160	-				+0.3
1,437,160	-				-0.7
1,437,160	-				+0.6
1,437,160	-				+1.3
1,437,160	-				+1.6
1,437,166	-				+1.2
1,437,213	+				+1.5
1,437,412	+		Atu4311	0.21	+0.9
1,437,429	+		Atu4311	0.26	+0.9
1,437,434	+		Atu4311	0.28	-0.5
1,437,458	-		Atu4311	0.36	+0.5
1,437,475	-		Atu4311	0.41	+0.4
1,437,505	-		Atu4311	0.50	-0.5
1,437,529	-		Atu4311	0.58	-1.3
1,437,552	-		Atu4311	0.65	+2.2
1,437,607	-		Atu4311	0.82	+1.3
1,437,640	-				-1.4
1,437,645	+				-1.2
1,437,653	-				-2.6
1,437,653	-				-1.9
1,437,767	+				-0.4
1,437,788	+				-0.3
1,437,788	-				-1.8
1,437,819	-				+0.3
1,437,847	+				-0.9
1,437,858	+				+0.1
1,437,890	-				+1.8
1,437,890	-				-1.0
1,437,997	+		Atu4312	0.11	-0.0
1,438,038	-		Atu4312	0.13	-1.3
1,438,182	-		Atu4312	0.17	-0.5
1,438,234	+		Atu4312	0.19	+1.3
1,438,242	-		Atu4312	0.19	+0.8
1,438,242	-		Atu4312	0.19	-0.4
1,438,295	-		Atu4312	0.21	+0.3
1,438,334	-		Atu4312	0.23	+0.3
1,438,368	-		Atu4312	0.24	+2.1
1,438,449	+		Atu4312	0.26	+0.2
1,438,483	+		Atu4312	0.27	-0.7
1,438,485	+		Atu4312	0.28	-0.6
1,438,493	-		Atu4312	0.28	-2.5
1,438,591	+		Atu4312	0.31	+0.3
1,438,591	+		Atu4312	0.31	-1.5
1,438,591	+		Atu4312	0.31	-0.2
1,438,591	+		Atu4312	0.31	-2.1
1,438,599	-		Atu4312	0.31	-0.3
1,438,599	-		Atu4312	0.31	-0.0
1,438,599	-		Atu4312	0.31	+0.3
1,438,599	-		Atu4312	0.31	-0.3
1,438,599	-		Atu4312	0.31	-0.3
1,438,599	-		Atu4312	0.31	-3.1
1,438,599	-		Atu4312	0.31	-0.5
1,438,632	-		Atu4312	0.32	-0.5
1,438,637	+		Atu4312	0.33	+1.0
1,438,651	+		Atu4312	0.33	-0.5
1,438,651	+		Atu4312	0.33	+0.8
1,438,691	+		Atu4312	0.34	+0.3
1,438,749	+		Atu4312	0.36	+1.5
1,438,856	+		Atu4312	0.40	-0.2
1,438,881	-		Atu4312	0.41	-0.7
1,438,905	-		Atu4312	0.42	-0.0
1,438,921	-		Atu4312	0.42	+1.2
1,438,950	+		Atu4312	0.43	-2.7
1,438,950	+		Atu4312	0.43	-1.0
1,438,964	+		Atu4312	0.44	+0.9
1,439,111	-		Atu4312	0.48	-0.3
1,439,111	-		Atu4312	0.48	-0.5
1,439,119	-		Atu4312	0.49	+0.5
1,439,161	+		Atu4312	0.50	+1.5
1,439,295	+		Atu4312	0.55	-0.1
1,439,297	-		Atu4312	0.55	+0.4
1,439,318	+		Atu4312	0.55	-1.3
1,439,350	+		Atu4312	0.56	+2.5
1,439,398	+		Atu4312	0.58	-0.3
1,439,443	-		Atu4312	0.60	-0.7
1,439,444	-		Atu4312	0.60	+1.4
1,439,543	+		Atu4312	0.63	-1.6
1,439,678	+		Atu4312	0.67	+2.8
1,439,686	-		Atu4312	0.68	-2.1
1,439,726	-		Atu4312	0.69	+1.4
1,439,755	+		Atu4312	0.70	-0.1
1,439,826	-		Atu4312	0.72	+0.0
1,439,865	+		Atu4312	0.74	+0.3
1,439,883	+		Atu4312	0.74	+0.3
1,439,885	-		Atu4312	0.74	+0.2
1,439,885	-		Atu4312	0.74	+0.9
1,439,950	+		Atu4312	0.77	+1.6
1,439,950	+		Atu4312	0.77	-0.5
1,439,969	+		Atu4312	0.77	+0.1
1,440,070	+		Atu4312	0.81	+0.5
1,440,093	-		Atu4312	0.81	-0.4
1,440,102	-		Atu4312	0.82	+0.3
1,440,187	+		Atu4312	0.84	+0.7
1,440,206	+		Atu4312	0.85	-1.5
1,440,229	+		Atu4312	0.86	-0.6
1,440,236	-		Atu4312	0.86	+0.5
1,440,271	+		Atu4312	0.87	+1.4
1,440,291	-		Atu4312	0.88	-0.7
1,440,291	-		Atu4312	0.88	+0.3
1,440,291	-		Atu4312	0.88	-1.2
1,440,536	-				+0.2
1,440,560	-				+0.1
1,440,716	-		Atu4313	0.10	-0.8
1,440,783	+		Atu4313	0.22	+0.5
1,440,807	-		Atu4313	0.27	-0.4
1,440,978	+		Atu4313	0.57	+1.0
1,441,001	-		Atu4313	0.61	+1.2
1,441,045	+		Atu4313	0.69	+0.8
1,441,053	-		Atu4313	0.70	-0.5
1,441,159	-		Atu4313	0.89	+0.4
1,441,384	+		Atu4314	0.12	-1.9
1,441,392	-		Atu4314	0.12	-0.4
1,441,415	-		Atu4314	0.14	+0.1
1,441,416	-		Atu4314	0.14	-1.4
1,441,463	-		Atu4314	0.18	-0.8
1,441,544	-		Atu4314	0.24	-1.5
1,441,612	+		Atu4314	0.30	+0.1
1,441,631	-		Atu4314	0.31	+0.9