Strain Fitness in Agrobacterium fabrum C58 around Atu4311

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,436,437	+		Atu4310	0.33	-1.1
1,436,448	+		Atu4310	0.34	+0.6
1,436,498	+		Atu4310	0.38	-1.1
1,436,498	+		Atu4310	0.38	-0.3
1,436,498	+		Atu4310	0.38	+0.1
1,436,506	-		Atu4310	0.38	-1.5
1,436,506	-		Atu4310	0.38	+0.8
1,436,506	-		Atu4310	0.38	-0.8
1,436,529	-		Atu4310	0.40	-1.1
1,436,531	+		Atu4310	0.40	+1.7
1,436,539	-		Atu4310	0.41	+1.2
1,436,539	-		Atu4310	0.41	-0.6
1,436,584	+		Atu4310	0.45	+0.7
1,436,593	-		Atu4310	0.45	-0.1
1,436,630	+		Atu4310	0.48	+0.6
1,436,638	-		Atu4310	0.49	+0.4
1,436,667	-		Atu4310	0.51	+1.1
1,436,814	+		Atu4310	0.63	+0.7
1,436,864	+		Atu4310	0.67	-0.4
1,436,921	+		Atu4310	0.72	-1.3
1,436,921	+		Atu4310	0.72	+0.1
1,436,921	+		Atu4310	0.72	+0.7
1,436,921	+		Atu4310	0.72	-0.5
1,436,921	+		Atu4310	0.72	+0.7
1,436,929	-		Atu4310	0.72	+1.5
1,436,931	-		Atu4310	0.72	+0.3
1,436,939	-		Atu4310	0.73	+0.5
1,437,033	-		Atu4310	0.80	-0.4
1,437,049	+		Atu4310	0.82	-1.1
1,437,070	-		Atu4310	0.83	-0.1
1,437,082	+		Atu4310	0.84	-0.8
1,437,152	+				+0.5
1,437,152	+				-0.4
1,437,152	+				+0.8
1,437,160	-				+0.3
1,437,160	-				-0.7
1,437,160	-				+0.6
1,437,160	-				+1.3
1,437,160	-				+1.6
1,437,166	-				+1.2
1,437,213	+				+1.5
1,437,412	+		Atu4311	0.21	+0.9
1,437,429	+		Atu4311	0.26	+0.9
1,437,434	+		Atu4311	0.28	-0.5
1,437,458	-		Atu4311	0.36	+0.5
1,437,475	-		Atu4311	0.41	+0.4
1,437,505	-		Atu4311	0.50	-0.5
1,437,529	-		Atu4311	0.58	-1.3
1,437,552	-		Atu4311	0.65	+2.2
1,437,607	-		Atu4311	0.82	+1.3
1,437,640	-				-1.4
1,437,645	+				-1.2
1,437,653	-				-2.6
1,437,653	-				-1.9
1,437,767	+				-0.4
1,437,788	+				-0.3
1,437,788	-				-1.8
1,437,819	-				+0.3
1,437,847	+				-0.9
1,437,858	+				+0.1
1,437,890	-				+1.8
1,437,890	-				-1.0
1,437,997	+		Atu4312	0.11	-0.0
1,438,038	-		Atu4312	0.13	-1.3
1,438,182	-		Atu4312	0.17	-0.5
1,438,234	+		Atu4312	0.19	+1.3
1,438,242	-		Atu4312	0.19	+0.8
1,438,242	-		Atu4312	0.19	-0.4
1,438,295	-		Atu4312	0.21	+0.3
1,438,334	-		Atu4312	0.23	+0.3
1,438,368	-		Atu4312	0.24	+2.1
1,438,449	+		Atu4312	0.26	+0.2
1,438,483	+		Atu4312	0.27	-0.7
1,438,485	+		Atu4312	0.28	-0.6
1,438,493	-		Atu4312	0.28	-2.5
1,438,591	+		Atu4312	0.31	+0.3
1,438,591	+		Atu4312	0.31	-1.5
1,438,591	+		Atu4312	0.31	-0.2
1,438,591	+		Atu4312	0.31	-2.1
1,438,599	-		Atu4312	0.31	-0.3
1,438,599	-		Atu4312	0.31	-0.0
1,438,599	-		Atu4312	0.31	+0.3
1,438,599	-		Atu4312	0.31	-0.3
1,438,599	-		Atu4312	0.31	-0.3
1,438,599	-		Atu4312	0.31	-3.1
1,438,599	-		Atu4312	0.31	-0.5
1,438,632	-		Atu4312	0.32	-0.5
1,438,637	+		Atu4312	0.33	+1.0
1,438,651	+		Atu4312	0.33	-0.5
1,438,651	+		Atu4312	0.33	+0.8