Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4222 and Atu4223 overlap by 4 nucleotides Atu4223 and Atu4224 are separated by 24 nucleotides Atu4224 and Atu4225 are separated by 90 nucleotides
Atu4222: Atu4222 - sarcosine oxidase alpha subunit, at 1,345,651 to 1,348,614
Atu4222
Atu4223: Atu4223 - sarcosine oxidase delta subunit, at 1,348,611 to 1,348,886
Atu4223
Atu4224: Atu4224 - sarcosine oxidase beta subunit, at 1,348,911 to 1,350,161
Atu4224
Atu4225: Atu4225 - AraC family transcriptional regulator, at 1,350,252 to 1,351,226
Atu4225
Position (kb)
1348
1349
1350
1351 Strain fitness (log2 ratio)
-2
-1
0
1 at 1347.913 kb on + strand, within Atu4222 at 1347.919 kb on + strand, within Atu4222 at 1347.925 kb on + strand, within Atu4222 at 1348.165 kb on - strand, within Atu4222 at 1348.225 kb on + strand, within Atu4222 at 1348.251 kb on + strand, within Atu4222 at 1348.262 kb on + strand, within Atu4222 at 1348.348 kb on - strand at 1348.372 kb on - strand at 1348.391 kb on - strand at 1348.500 kb on + strand at 1348.500 kb on + strand at 1348.500 kb on + strand at 1348.528 kb on + strand at 1348.566 kb on + strand at 1348.668 kb on + strand, within Atu4223 at 1348.696 kb on - strand, within Atu4223 at 1348.877 kb on - strand at 1348.877 kb on - strand at 1348.908 kb on + strand at 1348.926 kb on - strand at 1348.988 kb on + strand at 1349.057 kb on + strand, within Atu4224 at 1349.088 kb on + strand, within Atu4224 at 1349.116 kb on - strand, within Atu4224 at 1349.116 kb on - strand, within Atu4224 at 1349.129 kb on - strand, within Atu4224 at 1349.284 kb on + strand, within Atu4224 at 1349.330 kb on - strand, within Atu4224 at 1349.371 kb on - strand, within Atu4224 at 1349.396 kb on - strand, within Atu4224 at 1349.401 kb on - strand, within Atu4224 at 1349.439 kb on - strand, within Atu4224 at 1349.449 kb on - strand, within Atu4224 at 1349.548 kb on - strand, within Atu4224 at 1349.553 kb on + strand, within Atu4224 at 1349.561 kb on - strand, within Atu4224 at 1349.579 kb on + strand, within Atu4224 at 1349.598 kb on + strand, within Atu4224 at 1349.607 kb on - strand, within Atu4224 at 1349.708 kb on - strand, within Atu4224 at 1349.745 kb on - strand, within Atu4224 at 1349.765 kb on + strand, within Atu4224 at 1349.768 kb on + strand, within Atu4224 at 1349.860 kb on - strand, within Atu4224 at 1349.912 kb on + strand, within Atu4224 at 1349.986 kb on + strand, within Atu4224 at 1350.164 kb on + strand at 1350.189 kb on + strand at 1350.352 kb on + strand, within Atu4225 at 1350.352 kb on + strand, within Atu4225 at 1350.424 kb on - strand, within Atu4225 at 1350.523 kb on - strand, within Atu4225 at 1350.523 kb on - strand, within Atu4225 at 1350.546 kb on + strand, within Atu4225 at 1350.570 kb on + strand, within Atu4225 at 1350.697 kb on + strand, within Atu4225 at 1350.732 kb on + strand, within Atu4225 at 1350.834 kb on - strand, within Atu4225 at 1350.834 kb on - strand, within Atu4225 at 1350.842 kb on - strand, within Atu4225 at 1350.843 kb on + strand, within Atu4225 at 1350.864 kb on + strand, within Atu4225
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 1,347,913 + Atu4222 0.76 -0.4 1,347,919 + Atu4222 0.77 +0.1 1,347,925 + Atu4222 0.77 -0.3 1,348,165 - Atu4222 0.85 -0.6 1,348,225 + Atu4222 0.87 -2.0 1,348,251 + Atu4222 0.88 +0.2 1,348,262 + Atu4222 0.88 -2.6 1,348,348 - +0.2 1,348,372 - -2.5 1,348,391 - -1.8 1,348,500 + +0.2 1,348,500 + +0.9 1,348,500 + +1.3 1,348,528 + +1.5 1,348,566 + +0.7 1,348,668 + Atu4223 0.21 +1.5 1,348,696 - Atu4223 0.31 -1.3 1,348,877 - +0.1 1,348,877 - +1.2 1,348,908 + +0.5 1,348,926 - -1.2 1,348,988 + +0.9 1,349,057 + Atu4224 0.12 -0.1 1,349,088 + Atu4224 0.14 -2.5 1,349,116 - Atu4224 0.16 -2.1 1,349,116 - Atu4224 0.16 -0.1 1,349,129 - Atu4224 0.17 +0.6 1,349,284 + Atu4224 0.30 -0.8 1,349,330 - Atu4224 0.33 -0.8 1,349,371 - Atu4224 0.37 +0.2 1,349,396 - Atu4224 0.39 +1.5 1,349,401 - Atu4224 0.39 +0.5 1,349,439 - Atu4224 0.42 -0.1 1,349,449 - Atu4224 0.43 -2.3 1,349,548 - Atu4224 0.51 +0.3 1,349,553 + Atu4224 0.51 +0.7 1,349,561 - Atu4224 0.52 -0.8 1,349,579 + Atu4224 0.53 -1.1 1,349,598 + Atu4224 0.55 +1.4 1,349,607 - Atu4224 0.56 +0.6 1,349,708 - Atu4224 0.64 +0.7 1,349,745 - Atu4224 0.67 +0.9 1,349,765 + Atu4224 0.68 -0.0 1,349,768 + Atu4224 0.69 +0.6 1,349,860 - Atu4224 0.76 -0.1 1,349,912 + Atu4224 0.80 +0.1 1,349,986 + Atu4224 0.86 +1.3 1,350,164 + +0.6 1,350,189 + -1.7 1,350,352 + Atu4225 0.10 +0.0 1,350,352 + Atu4225 0.10 -0.1 1,350,424 - Atu4225 0.18 +0.6 1,350,523 - Atu4225 0.28 +0.5 1,350,523 - Atu4225 0.28 -0.1 1,350,546 + Atu4225 0.30 +0.7 1,350,570 + Atu4225 0.33 +0.5 1,350,697 + Atu4225 0.46 -1.5 1,350,732 + Atu4225 0.49 +0.1 1,350,834 - Atu4225 0.60 +0.9 1,350,834 - Atu4225 0.60 -1.1 1,350,842 - Atu4225 0.61 -0.5 1,350,843 + Atu4225 0.61 +0.7 1,350,864 + Atu4225 0.63 -1.5
Or see this region's nucleotide sequence