Strain Fitness in Agrobacterium fabrum C58 around Atu4224

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,347,913	+		Atu4222	0.76	-0.4
1,347,919	+		Atu4222	0.77	+0.1
1,347,925	+		Atu4222	0.77	-0.3
1,348,165	-		Atu4222	0.85	-0.6
1,348,225	+		Atu4222	0.87	-2.0
1,348,251	+		Atu4222	0.88	+0.2
1,348,262	+		Atu4222	0.88	-2.6
1,348,348	-				+0.2
1,348,372	-				-2.5
1,348,391	-				-1.8
1,348,500	+				+0.2
1,348,500	+				+0.9
1,348,500	+				+1.3
1,348,528	+				+1.5
1,348,566	+				+0.7
1,348,668	+		Atu4223	0.21	+1.5
1,348,696	-		Atu4223	0.31	-1.3
1,348,877	-				+0.1
1,348,877	-				+1.2
1,348,908	+				+0.5
1,348,926	-				-1.2
1,348,988	+				+0.9
1,349,057	+		Atu4224	0.12	-0.1
1,349,088	+		Atu4224	0.14	-2.5
1,349,116	-		Atu4224	0.16	-2.1
1,349,116	-		Atu4224	0.16	-0.1
1,349,129	-		Atu4224	0.17	+0.6
1,349,284	+		Atu4224	0.30	-0.8
1,349,330	-		Atu4224	0.33	-0.8
1,349,371	-		Atu4224	0.37	+0.2
1,349,396	-		Atu4224	0.39	+1.5
1,349,401	-		Atu4224	0.39	+0.5
1,349,439	-		Atu4224	0.42	-0.1
1,349,449	-		Atu4224	0.43	-2.3
1,349,548	-		Atu4224	0.51	+0.3
1,349,553	+		Atu4224	0.51	+0.7
1,349,561	-		Atu4224	0.52	-0.8
1,349,579	+		Atu4224	0.53	-1.1
1,349,598	+		Atu4224	0.55	+1.4
1,349,607	-		Atu4224	0.56	+0.6
1,349,708	-		Atu4224	0.64	+0.7
1,349,745	-		Atu4224	0.67	+0.9
1,349,765	+		Atu4224	0.68	-0.0
1,349,768	+		Atu4224	0.69	+0.6
1,349,860	-		Atu4224	0.76	-0.1
1,349,912	+		Atu4224	0.80	+0.1
1,349,986	+		Atu4224	0.86	+1.3
1,350,164	+				+0.6
1,350,189	+				-1.7
1,350,352	+		Atu4225	0.10	+0.0
1,350,352	+		Atu4225	0.10	-0.1
1,350,424	-		Atu4225	0.18	+0.6
1,350,523	-		Atu4225	0.28	+0.5
1,350,523	-		Atu4225	0.28	-0.1
1,350,546	+		Atu4225	0.30	+0.7
1,350,570	+		Atu4225	0.33	+0.5
1,350,697	+		Atu4225	0.46	-1.5
1,350,732	+		Atu4225	0.49	+0.1
1,350,834	-		Atu4225	0.60	+0.9
1,350,834	-		Atu4225	0.60	-1.1
1,350,842	-		Atu4225	0.61	-0.5
1,350,843	+		Atu4225	0.61	+0.7
1,350,864	+		Atu4225	0.63	-1.5