Strain Fitness in Agrobacterium fabrum C58 around Atu4222

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,344,676	-		Atu4220	0.53	-0.4
1,344,748	+		Atu4220	0.61	+2.5
1,344,748	+		Atu4220	0.61	+0.1
1,344,748	+		Atu4220	0.61	+0.2
1,344,748	+		Atu4220	0.61	-0.8
1,344,756	-		Atu4220	0.62	+1.5
1,344,756	-		Atu4220	0.62	+1.1
1,344,756	-		Atu4220	0.62	+0.1
1,344,756	-		Atu4220	0.62	-0.8
1,344,842	+		Atu4220	0.72	-1.5
1,344,857	-		Atu4220	0.74	-0.1
1,344,874	+		Atu4220	0.76	-1.3
1,344,895	+		Atu4220	0.78	-1.3
1,344,903	-		Atu4220	0.79	-0.1
1,344,908	-		Atu4220	0.80	-0.3
1,344,913	-		Atu4220	0.80	+1.6
1,345,086	+				+0.5
1,345,094	-				-0.3
1,345,278	-		Atu4221	0.31	-0.1
1,345,283	+		Atu4221	0.32	+0.1
1,345,355	+		Atu4221	0.45	+1.4
1,345,408	-		Atu4221	0.54	+0.7
1,345,419	-		Atu4221	0.56	-0.1
1,345,422	-		Atu4221	0.57	-0.6
1,345,440	+		Atu4221	0.60	+1.9
1,345,524	-		Atu4221	0.75	-2.0
1,345,529	-		Atu4221	0.76	-0.3
1,345,529	-		Atu4221	0.76	-0.5
1,345,529	-		Atu4221	0.76	+1.5
1,345,571	-		Atu4221	0.84	+0.7
1,345,596	+		Atu4221	0.89	+0.7
1,345,732	+				-0.5
1,345,741	-				+0.7
1,345,821	+				-0.0
1,345,840	-				+0.1
1,345,844	+				+1.0
1,346,075	-		Atu4222	0.14	+0.9
1,346,081	+		Atu4222	0.15	+0.3
1,346,172	+		Atu4222	0.18	+0.2
1,346,225	+		Atu4222	0.19	-0.5
1,346,414	-		Atu4222	0.26	-0.9
1,346,464	+		Atu4222	0.27	+0.1
1,346,547	+		Atu4222	0.30	-0.6
1,346,555	-		Atu4222	0.30	+1.1
1,346,555	-		Atu4222	0.30	-1.7
1,346,692	+		Atu4222	0.35	+1.4
1,346,700	-		Atu4222	0.35	+1.5
1,346,728	+		Atu4222	0.36	-1.3
1,346,996	+		Atu4222	0.45	+0.2
1,347,011	+		Atu4222	0.46	-1.7
1,347,017	+		Atu4222	0.46	+0.2
1,347,020	-		Atu4222	0.46	-0.6
1,347,036	+		Atu4222	0.47	+0.8
1,347,037	+		Atu4222	0.47	-0.8
1,347,037	+		Atu4222	0.47	+0.1
1,347,043	+		Atu4222	0.47	-0.5
1,347,045	-		Atu4222	0.47	+0.7
1,347,045	-		Atu4222	0.47	-1.7
1,347,069	-		Atu4222	0.48	-0.4
1,347,069	-		Atu4222	0.48	-0.1
1,347,243	+		Atu4222	0.54	+1.5
1,347,243	+		Atu4222	0.54	+0.4
1,347,243	+		Atu4222	0.54	+0.4
1,347,243	+		Atu4222	0.54	-1.1
1,347,243	+		Atu4222	0.54	+1.5
1,347,251	-		Atu4222	0.54	+0.2
1,347,251	-		Atu4222	0.54	+0.7
1,347,251	-		Atu4222	0.54	-0.3
1,347,276	+		Atu4222	0.55	+0.9
1,347,289	-		Atu4222	0.55	-0.1
1,347,336	+		Atu4222	0.57	+1.0
1,347,336	+		Atu4222	0.57	-0.3
1,347,349	-		Atu4222	0.57	-0.3
1,347,532	+		Atu4222	0.63	-0.7
1,347,532	+		Atu4222	0.63	+0.2
1,347,606	+		Atu4222	0.66	-1.3
1,347,614	-		Atu4222	0.66	+0.8
1,347,621	+		Atu4222	0.66	+0.8
1,347,685	-		Atu4222	0.69	+0.4
1,347,757	+		Atu4222	0.71	+0.8
1,347,793	-		Atu4222	0.72	-2.2
1,347,823	+		Atu4222	0.73	+0.8
1,347,831	-		Atu4222	0.74	+2.6
1,347,851	-		Atu4222	0.74	-0.0
1,347,913	+		Atu4222	0.76	-0.4
1,347,919	+		Atu4222	0.77	+0.1
1,347,925	+		Atu4222	0.77	-0.3
1,348,165	-		Atu4222	0.85	-0.6
1,348,225	+		Atu4222	0.87	-2.0
1,348,251	+		Atu4222	0.88	+0.2
1,348,262	+		Atu4222	0.88	-2.6
1,348,348	-				+0.2
1,348,372	-				-2.5
1,348,391	-				-1.8
1,348,500	+				+0.2
1,348,500	+				+0.9
1,348,500	+				+1.3
1,348,528	+				+1.5
1,348,566	+				+0.7
1,348,668	+		Atu4223	0.21	+1.5
1,348,696	-		Atu4223	0.31	-1.3
1,348,877	-				+0.1
1,348,877	-				+1.2
1,348,908	+				+0.5
1,348,926	-				-1.2
1,348,988	+				+0.9
1,349,057	+		Atu4224	0.12	-0.1
1,349,088	+		Atu4224	0.14	-2.5
1,349,116	-		Atu4224	0.16	-2.1
1,349,116	-		Atu4224	0.16	-0.1
1,349,129	-		Atu4224	0.17	+0.6
1,349,284	+		Atu4224	0.30	-0.8
1,349,330	-		Atu4224	0.33	-0.8
1,349,371	-		Atu4224	0.37	+0.2
1,349,396	-		Atu4224	0.39	+1.5
1,349,401	-		Atu4224	0.39	+0.5
1,349,439	-		Atu4224	0.42	-0.1
1,349,449	-		Atu4224	0.43	-2.3
1,349,548	-		Atu4224	0.51	+0.3
1,349,553	+		Atu4224	0.51	+0.7
1,349,561	-		Atu4224	0.52	-0.8
1,349,579	+		Atu4224	0.53	-1.1
1,349,598	+		Atu4224	0.55	+1.4
1,349,607	-		Atu4224	0.56	+0.6