Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3795 and Atu3796 overlap by 4 nucleotides Atu3796 and Atu3797 overlap by 1 nucleotides
Atu3795: Atu3795 - AcrB/AcrD/AcrF family protein, at 888,269 to 891,340
Atu3795
Atu3796: Atu3796 - efflux protein, at 891,337 to 892,422
Atu3796
Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498
Atu3797
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 890.613 kb on - strand, within Atu3795 at 890.667 kb on + strand, within Atu3795 at 890.712 kb on + strand, within Atu3795 at 890.776 kb on + strand, within Atu3795 at 890.878 kb on + strand, within Atu3795 at 890.900 kb on + strand, within Atu3795 at 890.908 kb on - strand, within Atu3795 at 890.908 kb on - strand, within Atu3795 at 890.908 kb on - strand, within Atu3795 at 890.921 kb on - strand, within Atu3795 at 890.978 kb on + strand, within Atu3795 at 890.981 kb on - strand, within Atu3795 at 891.061 kb on + strand at 891.075 kb on + strand at 891.077 kb on - strand at 891.079 kb on + strand at 891.087 kb on - strand at 891.087 kb on - strand at 891.110 kb on - strand at 891.145 kb on + strand at 891.191 kb on + strand at 891.194 kb on - strand at 891.196 kb on + strand at 891.199 kb on - strand at 891.274 kb on - strand at 891.292 kb on - strand at 891.359 kb on + strand at 891.378 kb on + strand at 891.378 kb on + strand at 891.378 kb on + strand at 891.385 kb on + strand at 891.446 kb on + strand, within Atu3796 at 891.503 kb on - strand, within Atu3796 at 891.629 kb on - strand, within Atu3796 at 891.716 kb on - strand, within Atu3796 at 891.758 kb on - strand, within Atu3796 at 891.798 kb on + strand, within Atu3796 at 891.807 kb on - strand, within Atu3796 at 891.827 kb on - strand, within Atu3796 at 891.901 kb on + strand, within Atu3796 at 891.921 kb on + strand, within Atu3796 at 891.928 kb on + strand, within Atu3796 at 891.959 kb on + strand, within Atu3796 at 892.002 kb on + strand, within Atu3796 at 892.005 kb on - strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.063 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.186 kb on - strand, within Atu3796 at 892.255 kb on - strand, within Atu3796 at 892.258 kb on + strand, within Atu3796 at 892.300 kb on - strand, within Atu3796 at 892.408 kb on + strand at 892.509 kb on - strand at 892.514 kb on + strand at 892.517 kb on - strand at 892.556 kb on + strand, within Atu3797 at 892.559 kb on - strand, within Atu3797 at 892.635 kb on - strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.747 kb on + strand, within Atu3797 at 892.782 kb on + strand, within Atu3797 at 892.995 kb on - strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.034 kb on + strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.098 kb on - strand, within Atu3797 at 893.116 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.331 kb on - strand, within Atu3797 at 893.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 890,613 - Atu3795 0.76 +3.1 890,667 + Atu3795 0.78 +0.2 890,712 + Atu3795 0.80 +4.6 890,776 + Atu3795 0.82 +2.8 890,878 + Atu3795 0.85 +2.5 890,900 + Atu3795 0.86 +1.9 890,908 - Atu3795 0.86 +2.4 890,908 - Atu3795 0.86 +2.7 890,908 - Atu3795 0.86 +3.1 890,921 - Atu3795 0.86 +2.9 890,978 + Atu3795 0.88 +2.7 890,981 - Atu3795 0.88 +3.2 891,061 + +2.5 891,075 + +3.8 891,077 - +3.1 891,079 + +2.4 891,087 - +3.3 891,087 - +2.8 891,110 - +2.8 891,145 + +3.1 891,191 + +2.6 891,194 - +2.7 891,196 + +3.0 891,199 - +3.0 891,274 - +2.5 891,292 - +2.3 891,359 + +1.7 891,378 + +1.1 891,378 + +3.3 891,378 + +2.2 891,385 + +2.2 891,446 + Atu3796 0.10 +0.5 891,503 - Atu3796 0.15 -1.1 891,629 - Atu3796 0.27 +2.9 891,716 - Atu3796 0.35 +2.2 891,758 - Atu3796 0.39 +3.4 891,798 + Atu3796 0.42 +2.3 891,807 - Atu3796 0.43 +4.2 891,827 - Atu3796 0.45 +2.3 891,901 + Atu3796 0.52 +2.9 891,921 + Atu3796 0.54 +3.3 891,928 + Atu3796 0.54 +0.8 891,959 + Atu3796 0.57 +2.0 892,002 + Atu3796 0.61 +1.9 892,005 - Atu3796 0.62 +3.8 892,055 + Atu3796 0.66 +3.0 892,055 + Atu3796 0.66 +2.5 892,063 - Atu3796 0.67 +2.9 892,073 - Atu3796 0.68 +2.7 892,073 - Atu3796 0.68 +1.1 892,186 - Atu3796 0.78 +4.7 892,255 - Atu3796 0.85 +2.4 892,258 + Atu3796 0.85 +2.8 892,300 - Atu3796 0.89 +2.6 892,408 + +2.5 892,509 - +3.1 892,514 + +2.6 892,517 - +1.2 892,556 + Atu3797 0.12 +0.9 892,559 - Atu3797 0.13 +2.9 892,635 - Atu3797 0.20 +1.8 892,729 + Atu3797 0.29 +2.8 892,729 + Atu3797 0.29 +2.9 892,729 + Atu3797 0.29 +3.3 892,737 - Atu3797 0.29 +2.5 892,737 - Atu3797 0.29 +2.8 892,747 + Atu3797 0.30 +2.8 892,782 + Atu3797 0.33 +3.2 892,995 - Atu3797 0.53 -0.8 892,999 + Atu3797 0.54 +4.8 892,999 + Atu3797 0.54 -1.1 892,999 + Atu3797 0.54 +3.5 892,999 + Atu3797 0.54 -0.1 892,999 + Atu3797 0.54 +3.1 892,999 + Atu3797 0.54 +2.7 893,007 - Atu3797 0.54 +2.9 893,007 - Atu3797 0.54 +2.8 893,007 - Atu3797 0.54 +2.4 893,007 - Atu3797 0.54 +2.2 893,007 - Atu3797 0.54 +2.0 893,007 - Atu3797 0.54 +2.9 893,007 - Atu3797 0.54 +3.2 893,034 + Atu3797 0.57 +3.5 893,042 - Atu3797 0.58 +1.8 893,042 - Atu3797 0.58 +3.7 893,098 - Atu3797 0.63 +3.3 893,116 + Atu3797 0.64 +2.2 893,313 + Atu3797 0.83 +1.9 893,313 + Atu3797 0.83 +2.4 893,331 - Atu3797 0.84 +0.5 893,394 + +2.4
Or see this region's nucleotide sequence