Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3575 and Atu3576 are separated by 80 nucleotides Atu3576 and Atu3577 are separated by 232 nucleotides
Atu3575: Atu3575 - xylose ABC transporter permease, at 628,435 to 629,748
Atu3575
Atu3576: Atu3576 - xylose ABC transporter substrate-binding protein, at 629,829 to 630,869
Atu3576
Atu3577: Atu3577 - transcriptional regulator, at 631,102 to 632,346
Atu3577
Position (kb) 629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 628.852 kb on + strand, within Atu3575 at 628.890 kb on - strand, within Atu3575 at 628.903 kb on - strand, within Atu3575 at 628.933 kb on + strand, within Atu3575 at 628.996 kb on - strand, within Atu3575 at 629.099 kb on - strand, within Atu3575 at 629.160 kb on - strand, within Atu3575 at 629.209 kb on + strand, within Atu3575 at 629.402 kb on - strand, within Atu3575 at 629.542 kb on + strand, within Atu3575 at 629.672 kb on - strand at 629.744 kb on + strand at 629.833 kb on + strand at 629.838 kb on - strand at 629.846 kb on - strand at 629.990 kb on - strand, within Atu3576 at 630.056 kb on - strand, within Atu3576 at 630.088 kb on + strand, within Atu3576 at 630.174 kb on - strand, within Atu3576 at 630.174 kb on - strand, within Atu3576 at 630.240 kb on - strand, within Atu3576 at 630.276 kb on + strand, within Atu3576 at 630.306 kb on + strand, within Atu3576 at 630.306 kb on + strand, within Atu3576 at 630.314 kb on - strand, within Atu3576 at 630.325 kb on + strand, within Atu3576 at 630.325 kb on + strand, within Atu3576 at 630.333 kb on - strand, within Atu3576 at 630.412 kb on + strand, within Atu3576 at 630.486 kb on - strand, within Atu3576 at 630.496 kb on + strand, within Atu3576 at 630.509 kb on + strand, within Atu3576 at 630.597 kb on + strand, within Atu3576 at 630.600 kb on - strand, within Atu3576 at 630.675 kb on + strand, within Atu3576 at 630.732 kb on - strand, within Atu3576 at 630.828 kb on + strand at 630.852 kb on - strand at 630.901 kb on + strand at 631.010 kb on + strand at 631.099 kb on - strand at 631.104 kb on + strand at 631.113 kb on - strand at 631.205 kb on - strand at 631.233 kb on - strand, within Atu3577 at 631.279 kb on - strand, within Atu3577 at 631.285 kb on - strand, within Atu3577 at 631.341 kb on + strand, within Atu3577 at 631.462 kb on + strand, within Atu3577 at 631.541 kb on + strand, within Atu3577 at 631.599 kb on - strand, within Atu3577 at 631.604 kb on - strand, within Atu3577 at 631.760 kb on - strand, within Atu3577 at 631.783 kb on + strand, within Atu3577 at 631.800 kb on + strand, within Atu3577 at 631.846 kb on + strand, within Atu3577 at 631.854 kb on - strand, within Atu3577 at 631.854 kb on - strand, within Atu3577
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 628,852 + Atu3575 0.32 -0.5 628,890 - Atu3575 0.35 +1.2 628,903 - Atu3575 0.36 -1.5 628,933 + Atu3575 0.38 +1.9 628,996 - Atu3575 0.43 +0.9 629,099 - Atu3575 0.51 -1.9 629,160 - Atu3575 0.55 -1.9 629,209 + Atu3575 0.59 +0.5 629,402 - Atu3575 0.74 -0.4 629,542 + Atu3575 0.84 +2.2 629,672 - +1.8 629,744 + +0.4 629,833 + -1.9 629,838 - +1.2 629,846 - +1.5 629,990 - Atu3576 0.15 +0.4 630,056 - Atu3576 0.22 +0.3 630,088 + Atu3576 0.25 -1.7 630,174 - Atu3576 0.33 -0.3 630,174 - Atu3576 0.33 +1.6 630,240 - Atu3576 0.39 -0.3 630,276 + Atu3576 0.43 -1.0 630,306 + Atu3576 0.46 +0.6 630,306 + Atu3576 0.46 -0.3 630,314 - Atu3576 0.47 +0.5 630,325 + Atu3576 0.48 +0.5 630,325 + Atu3576 0.48 -0.4 630,333 - Atu3576 0.48 +2.0 630,412 + Atu3576 0.56 -1.2 630,486 - Atu3576 0.63 +0.9 630,496 + Atu3576 0.64 -1.2 630,509 + Atu3576 0.65 +1.8 630,597 + Atu3576 0.74 +1.3 630,600 - Atu3576 0.74 +0.6 630,675 + Atu3576 0.81 -0.3 630,732 - Atu3576 0.87 +2.4 630,828 + +3.6 630,852 - -2.8 630,901 + -2.0 631,010 + -2.5 631,099 - -0.7 631,104 + +2.6 631,113 - -0.6 631,205 - +1.8 631,233 - Atu3577 0.11 +0.0 631,279 - Atu3577 0.14 +1.1 631,285 - Atu3577 0.15 +0.3 631,341 + Atu3577 0.19 +1.9 631,462 + Atu3577 0.29 +0.1 631,541 + Atu3577 0.35 +0.6 631,599 - Atu3577 0.40 -2.0 631,604 - Atu3577 0.40 -1.3 631,760 - Atu3577 0.53 +0.0 631,783 + Atu3577 0.55 +2.2 631,800 + Atu3577 0.56 +2.0 631,846 + Atu3577 0.60 -1.4 631,854 - Atu3577 0.60 -0.1 631,854 - Atu3577 0.60 -0.1
Or see this region's nucleotide sequence