Strain Fitness in Agrobacterium fabrum C58 around Atu3576
Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 12.5 ug/mL |
---|---|---|---|---|---|
remove | |||||
628,852 | + | Atu3575 | 0.32 | -0.5 | |
628,890 | - | Atu3575 | 0.35 | +1.2 | |
628,903 | - | Atu3575 | 0.36 | -1.5 | |
628,933 | + | Atu3575 | 0.38 | +1.9 | |
628,996 | - | Atu3575 | 0.43 | +0.9 | |
629,099 | - | Atu3575 | 0.51 | -1.9 | |
629,160 | - | Atu3575 | 0.55 | -1.9 | |
629,209 | + | Atu3575 | 0.59 | +0.5 | |
629,402 | - | Atu3575 | 0.74 | -0.4 | |
629,542 | + | Atu3575 | 0.84 | +2.2 | |
629,672 | - | +1.8 | |||
629,744 | + | +0.4 | |||
629,833 | + | -1.9 | |||
629,838 | - | +1.2 | |||
629,846 | - | +1.5 | |||
629,990 | - | Atu3576 | 0.15 | +0.4 | |
630,056 | - | Atu3576 | 0.22 | +0.3 | |
630,088 | + | Atu3576 | 0.25 | -1.7 | |
630,174 | - | Atu3576 | 0.33 | -0.3 | |
630,174 | - | Atu3576 | 0.33 | +1.6 | |
630,240 | - | Atu3576 | 0.39 | -0.3 | |
630,276 | + | Atu3576 | 0.43 | -1.0 | |
630,306 | + | Atu3576 | 0.46 | +0.6 | |
630,306 | + | Atu3576 | 0.46 | -0.3 | |
630,314 | - | Atu3576 | 0.47 | +0.5 | |
630,325 | + | Atu3576 | 0.48 | +0.5 | |
630,325 | + | Atu3576 | 0.48 | -0.4 | |
630,333 | - | Atu3576 | 0.48 | +2.0 | |
630,412 | + | Atu3576 | 0.56 | -1.2 | |
630,486 | - | Atu3576 | 0.63 | +0.9 | |
630,496 | + | Atu3576 | 0.64 | -1.2 | |
630,509 | + | Atu3576 | 0.65 | +1.8 | |
630,597 | + | Atu3576 | 0.74 | +1.3 | |
630,600 | - | Atu3576 | 0.74 | +0.6 | |
630,675 | + | Atu3576 | 0.81 | -0.3 | |
630,732 | - | Atu3576 | 0.87 | +2.4 | |
630,828 | + | +3.6 | |||
630,852 | - | -2.8 | |||
630,901 | + | -2.0 | |||
631,010 | + | -2.5 | |||
631,099 | - | -0.7 | |||
631,104 | + | +2.6 | |||
631,113 | - | -0.6 | |||
631,205 | - | +1.8 | |||
631,233 | - | Atu3577 | 0.11 | +0.0 | |
631,279 | - | Atu3577 | 0.14 | +1.1 | |
631,285 | - | Atu3577 | 0.15 | +0.3 | |
631,341 | + | Atu3577 | 0.19 | +1.9 | |
631,462 | + | Atu3577 | 0.29 | +0.1 | |
631,541 | + | Atu3577 | 0.35 | +0.6 | |
631,599 | - | Atu3577 | 0.40 | -2.0 | |
631,604 | - | Atu3577 | 0.40 | -1.3 | |
631,760 | - | Atu3577 | 0.53 | +0.0 | |
631,783 | + | Atu3577 | 0.55 | +2.2 | |
631,800 | + | Atu3577 | 0.56 | +2.0 | |
631,846 | + | Atu3577 | 0.60 | -1.4 | |
631,854 | - | Atu3577 | 0.60 | -0.1 | |
631,854 | - | Atu3577 | 0.60 | -0.1 |
Or see this region's nucleotide sequence