Strain Fitness in Agrobacterium fabrum C58 around Atu3481
Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 12.5 ug/mL |
---|---|---|---|---|---|
remove | |||||
529,268 | + | -1.1 | |||
529,276 | - | +0.6 | |||
529,447 | - | Atu3480 | 0.15 | +0.1 | |
529,447 | - | Atu3480 | 0.15 | +0.0 | |
529,518 | - | Atu3480 | 0.23 | +0.7 | |
529,530 | - | Atu3480 | 0.24 | -0.1 | |
529,672 | - | Atu3480 | 0.39 | +0.3 | |
529,693 | + | Atu3480 | 0.42 | -0.3 | |
529,816 | - | Atu3480 | 0.55 | -0.2 | |
529,877 | + | Atu3480 | 0.61 | -1.5 | |
529,938 | + | Atu3480 | 0.68 | -0.6 | |
529,938 | + | Atu3480 | 0.68 | -2.5 | |
529,982 | + | Atu3480 | 0.73 | -0.6 | |
530,036 | - | Atu3480 | 0.79 | -0.4 | |
530,206 | + | -0.8 | |||
530,493 | + | Atu3481 | 0.35 | -0.9 | |
530,520 | + | Atu3481 | 0.38 | +0.1 | |
530,533 | + | Atu3481 | 0.40 | +0.8 | |
530,703 | - | Atu3481 | 0.62 | +0.9 | |
530,737 | + | Atu3481 | 0.66 | -0.2 | |
530,786 | + | Atu3481 | 0.72 | -0.0 | |
530,993 | + | +0.4 | |||
531,060 | - | -0.9 | |||
531,092 | + | -0.4 | |||
531,223 | + | +0.6 | |||
531,276 | - | Atu3482 | 0.15 | +0.6 | |
531,422 | - | Atu3482 | 0.32 | -0.1 | |
531,446 | + | Atu3482 | 0.35 | +1.6 | |
531,586 | + | Atu3482 | 0.51 | +2.2 | |
531,628 | - | Atu3482 | 0.56 | +0.3 | |
531,628 | - | Atu3482 | 0.56 | +0.6 | |
531,628 | - | Atu3482 | 0.56 | -1.9 | |
531,710 | - | Atu3482 | 0.65 | +0.5 | |
531,772 | + | Atu3482 | 0.72 | -0.7 | |
531,923 | - | Atu3482 | 0.89 | +1.4 |
Or see this region's nucleotide sequence