Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3321 and Atu3322 are separated by 620 nucleotides Atu3322 and Atu3323 are separated by 8 nucleotides
Atu3321: Atu3321 - hypothetical protein, at 352,131 to 354,152
Atu3321
Atu3322: Atu3322 - ABC transporter permease, at 354,773 to 356,428
Atu3322
Atu3323: Atu3323 - HlyD family secretion protein, at 356,437 to 357,795
Atu3323
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 353.881 kb on - strand, within Atu3321 at 353.913 kb on + strand, within Atu3321 at 353.913 kb on - strand, within Atu3321 at 354.080 kb on + strand at 354.090 kb on + strand at 354.098 kb on - strand at 354.147 kb on + strand at 354.169 kb on + strand at 354.170 kb on + strand at 354.178 kb on - strand at 354.200 kb on - strand at 354.363 kb on + strand at 354.371 kb on - strand at 354.430 kb on + strand at 354.546 kb on - strand at 354.748 kb on + strand at 354.857 kb on + strand at 354.989 kb on + strand, within Atu3322 at 355.055 kb on - strand, within Atu3322 at 355.068 kb on + strand, within Atu3322 at 355.153 kb on + strand, within Atu3322 at 355.192 kb on + strand, within Atu3322 at 355.262 kb on + strand, within Atu3322 at 355.336 kb on + strand, within Atu3322 at 355.360 kb on - strand, within Atu3322 at 355.414 kb on - strand, within Atu3322 at 355.614 kb on + strand, within Atu3322 at 355.826 kb on - strand, within Atu3322 at 355.850 kb on + strand, within Atu3322 at 355.899 kb on + strand, within Atu3322 at 355.940 kb on + strand, within Atu3322 at 355.969 kb on + strand, within Atu3322 at 356.082 kb on - strand, within Atu3322 at 356.118 kb on - strand, within Atu3322 at 356.129 kb on - strand, within Atu3322 at 356.163 kb on - strand, within Atu3322 at 356.194 kb on + strand, within Atu3322 at 356.196 kb on - strand, within Atu3322 at 356.227 kb on + strand, within Atu3322 at 356.227 kb on + strand, within Atu3322 at 356.358 kb on + strand at 356.423 kb on + strand at 356.424 kb on - strand at 356.448 kb on + strand at 356.486 kb on - strand at 356.498 kb on + strand at 356.501 kb on - strand at 356.501 kb on - strand at 356.513 kb on + strand at 356.545 kb on - strand at 356.545 kb on - strand at 356.580 kb on + strand, within Atu3323 at 356.614 kb on + strand, within Atu3323 at 356.651 kb on - strand, within Atu3323 at 356.822 kb on + strand, within Atu3323 at 356.833 kb on + strand, within Atu3323 at 356.976 kb on + strand, within Atu3323 at 357.106 kb on + strand, within Atu3323 at 357.155 kb on - strand, within Atu3323 at 357.322 kb on + strand, within Atu3323 at 357.374 kb on + strand, within Atu3323 at 357.380 kb on + strand, within Atu3323
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 353,881 - Atu3321 0.87 -0.3 353,913 + Atu3321 0.88 +0.8 353,913 - Atu3321 0.88 +1.4 354,080 + -0.2 354,090 + -0.4 354,098 - +0.2 354,147 + +0.0 354,169 + +0.4 354,170 + +1.0 354,178 - +0.2 354,200 - +1.5 354,363 + -0.6 354,371 - -0.2 354,430 + -1.1 354,546 - +2.8 354,748 + +0.4 354,857 + +0.1 354,989 + Atu3322 0.13 -0.2 355,055 - Atu3322 0.17 -0.4 355,068 + Atu3322 0.18 -0.4 355,153 + Atu3322 0.23 +0.0 355,192 + Atu3322 0.25 -0.4 355,262 + Atu3322 0.30 +0.2 355,336 + Atu3322 0.34 +0.0 355,360 - Atu3322 0.35 +0.3 355,414 - Atu3322 0.39 +0.0 355,614 + Atu3322 0.51 +0.9 355,826 - Atu3322 0.64 -1.4 355,850 + Atu3322 0.65 -0.2 355,899 + Atu3322 0.68 -0.2 355,940 + Atu3322 0.70 -0.4 355,969 + Atu3322 0.72 -1.6 356,082 - Atu3322 0.79 -1.8 356,118 - Atu3322 0.81 +0.6 356,129 - Atu3322 0.82 -1.1 356,163 - Atu3322 0.84 -0.6 356,194 + Atu3322 0.86 +0.6 356,196 - Atu3322 0.86 +1.3 356,227 + Atu3322 0.88 -0.1 356,227 + Atu3322 0.88 +0.0 356,358 + -0.0 356,423 + +0.7 356,424 - -1.3 356,448 + +0.0 356,486 - -0.7 356,498 + +0.4 356,501 - -2.2 356,501 - +0.9 356,513 + -0.4 356,545 - +0.0 356,545 - +0.2 356,580 + Atu3323 0.11 -1.0 356,614 + Atu3323 0.13 +0.5 356,651 - Atu3323 0.16 -0.6 356,822 + Atu3323 0.28 +1.6 356,833 + Atu3323 0.29 -1.7 356,976 + Atu3323 0.40 +0.0 357,106 + Atu3323 0.49 +0.1 357,155 - Atu3323 0.53 -0.2 357,322 + Atu3323 0.65 +0.0 357,374 + Atu3323 0.69 -0.7 357,380 + Atu3323 0.69 +1.3
Or see this region's nucleotide sequence