Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3236 and Atu3237 are separated by 17 nucleotides Atu3237 and Atu3238 overlap by 8 nucleotides Atu3238 and Atu3239 are separated by 71 nucleotides
Atu3236: Atu3236 - sugar ABC transporter ATPase, at 252,535 to 253,608
Atu3236
Atu3237: Atu3237 - sugar ABC transporter permease, at 253,626 to 254,474
Atu3237
Atu3238: Atu3238 - sugar ABC transporter permease, at 254,467 to 255,399
Atu3238
Atu3239: Atu3239 - sugar ABC transporter substrate-binding protein, at 255,471 to 256,772
Atu3239
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 253.474 kb on - strand, within Atu3236 at 253.584 kb on - strand at 253.688 kb on - strand at 253.766 kb on + strand, within Atu3237 at 253.892 kb on + strand, within Atu3237 at 254.074 kb on + strand, within Atu3237 at 254.165 kb on + strand, within Atu3237 at 254.175 kb on + strand, within Atu3237 at 254.212 kb on - strand, within Atu3237 at 254.271 kb on + strand, within Atu3237 at 254.431 kb on - strand at 254.463 kb on - strand at 254.468 kb on + strand at 254.582 kb on + strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.597 kb on + strand, within Atu3238 at 254.674 kb on - strand, within Atu3238 at 254.702 kb on - strand, within Atu3238 at 254.711 kb on + strand, within Atu3238 at 254.729 kb on - strand, within Atu3238 at 254.847 kb on + strand, within Atu3238 at 254.862 kb on + strand, within Atu3238 at 254.870 kb on - strand, within Atu3238 at 255.110 kb on - strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.227 kb on - strand, within Atu3238 at 255.477 kb on - strand at 255.477 kb on - strand at 255.477 kb on - strand at 255.479 kb on + strand at 255.487 kb on - strand at 255.580 kb on - strand at 255.635 kb on - strand, within Atu3239 at 255.662 kb on - strand, within Atu3239 at 255.721 kb on + strand, within Atu3239 at 255.793 kb on - strand, within Atu3239 at 255.919 kb on - strand, within Atu3239 at 255.977 kb on + strand, within Atu3239 at 256.054 kb on - strand, within Atu3239 at 256.059 kb on - strand, within Atu3239 at 256.070 kb on - strand, within Atu3239 at 256.083 kb on + strand, within Atu3239 at 256.136 kb on - strand, within Atu3239 at 256.170 kb on - strand, within Atu3239 at 256.215 kb on - strand, within Atu3239 at 256.245 kb on + strand, within Atu3239 at 256.263 kb on - strand, within Atu3239 at 256.328 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.378 kb on + strand, within Atu3239 at 256.384 kb on + strand, within Atu3239
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 253,474 - Atu3236 0.87 -2.0 253,584 - +0.3 253,688 - -0.1 253,766 + Atu3237 0.16 +0.9 253,892 + Atu3237 0.31 -1.2 254,074 + Atu3237 0.53 +0.0 254,165 + Atu3237 0.63 -0.8 254,175 + Atu3237 0.65 +1.9 254,212 - Atu3237 0.69 -1.0 254,271 + Atu3237 0.76 -0.2 254,431 - -0.4 254,463 - -0.2 254,468 + -1.4 254,582 + Atu3238 0.12 -0.9 254,590 - Atu3238 0.13 +1.6 254,590 - Atu3238 0.13 -0.7 254,597 + Atu3238 0.14 +0.0 254,674 - Atu3238 0.22 -0.8 254,702 - Atu3238 0.25 -0.1 254,711 + Atu3238 0.26 +0.4 254,729 - Atu3238 0.28 -0.3 254,847 + Atu3238 0.41 +0.2 254,862 + Atu3238 0.42 -2.2 254,870 - Atu3238 0.43 +0.9 255,110 - Atu3238 0.69 -1.8 255,224 + Atu3238 0.81 -1.1 255,224 + Atu3238 0.81 +0.2 255,224 + Atu3238 0.81 -0.8 255,227 - Atu3238 0.81 -2.0 255,477 - -0.4 255,477 - -2.6 255,477 - +0.0 255,479 + +1.0 255,487 - +1.6 255,580 - +0.0 255,635 - Atu3239 0.13 -1.7 255,662 - Atu3239 0.15 -1.5 255,721 + Atu3239 0.19 -1.0 255,793 - Atu3239 0.25 -0.7 255,919 - Atu3239 0.34 +1.6 255,977 + Atu3239 0.39 -1.9 256,054 - Atu3239 0.45 +1.3 256,059 - Atu3239 0.45 -2.4 256,070 - Atu3239 0.46 -0.4 256,083 + Atu3239 0.47 +0.8 256,136 - Atu3239 0.51 -1.0 256,170 - Atu3239 0.54 -0.0 256,215 - Atu3239 0.57 +0.0 256,245 + Atu3239 0.59 +0.1 256,263 - Atu3239 0.61 -0.4 256,328 + Atu3239 0.66 -0.1 256,333 + Atu3239 0.66 +0.2 256,333 + Atu3239 0.66 -0.1 256,333 + Atu3239 0.66 +2.6 256,333 + Atu3239 0.66 -0.1 256,333 + Atu3239 0.66 -2.1 256,333 + Atu3239 0.66 +2.3 256,333 + Atu3239 0.66 -0.3 256,341 - Atu3239 0.67 +0.3 256,341 - Atu3239 0.67 -1.7 256,341 - Atu3239 0.67 +0.1 256,341 - Atu3239 0.67 +1.0 256,341 - Atu3239 0.67 +0.8 256,378 + Atu3239 0.70 -0.5 256,384 + Atu3239 0.70 +3.0
Or see this region's nucleotide sequence