Strain Fitness in Agrobacterium fabrum C58 around Atu3228

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3227 and Atu3228 are separated by 7 nucleotidesAtu3228 and Atu3229 overlap by 4 nucleotides Atu3227: Atu3227 - AraC family transcriptional regulator, at 241,387 to 242,325 Atu3227 Atu3228: Atu3228 - DNA polymerase III subunit alpha, at 242,333 to 245,608 Atu3228 Atu3229: Atu3229 - hypothetical protein, at 245,605 to 247,023 Atu3229 Position (kb) 242 243 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1at 241.352 kb on + strandat 241.569 kb on - strand, within Atu3227at 241.604 kb on + strand, within Atu3227at 241.612 kb on - strand, within Atu3227at 241.612 kb on - strand, within Atu3227at 241.624 kb on - strand, within Atu3227at 241.919 kb on + strand, within Atu3227at 241.920 kb on - strand, within Atu3227at 241.924 kb on + strand, within Atu3227at 241.937 kb on - strand, within Atu3227at 242.040 kb on + strand, within Atu3227at 242.176 kb on - strand, within Atu3227at 242.222 kb on - strand, within Atu3227at 242.597 kb on + strandat 242.602 kb on + strandat 242.659 kb on - strandat 242.661 kb on + strand, within Atu3228at 242.736 kb on - strand, within Atu3228at 242.828 kb on - strand, within Atu3228at 242.828 kb on - strand, within Atu3228at 242.828 kb on - strand, within Atu3228at 242.839 kb on + strand, within Atu3228at 242.847 kb on - strand, within Atu3228at 242.847 kb on - strand, within Atu3228at 242.852 kb on - strand, within Atu3228at 242.855 kb on + strand, within Atu3228at 242.861 kb on + strand, within Atu3228at 242.894 kb on - strand, within Atu3228at 242.911 kb on + strand, within Atu3228at 243.172 kb on + strand, within Atu3228at 243.187 kb on + strand, within Atu3228at 243.195 kb on - strand, within Atu3228at 243.252 kb on + strand, within Atu3228at 243.386 kb on - strand, within Atu3228at 243.424 kb on + strand, within Atu3228at 243.432 kb on - strand, within Atu3228at 243.612 kb on - strand, within Atu3228at 243.643 kb on - strand, within Atu3228at 243.732 kb on + strand, within Atu3228at 243.752 kb on - strand, within Atu3228at 243.754 kb on + strand, within Atu3228at 243.758 kb on + strand, within Atu3228at 243.786 kb on - strand, within Atu3228at 243.921 kb on - strand, within Atu3228at 243.977 kb on - strand, within Atu3228at 244.162 kb on + strand, within Atu3228at 244.276 kb on + strand, within Atu3228at 244.342 kb on - strand, within Atu3228at 244.371 kb on - strand, within Atu3228at 244.387 kb on + strand, within Atu3228at 244.387 kb on + strand, within Atu3228at 244.392 kb on + strand, within Atu3228at 244.392 kb on + strand, within Atu3228at 244.395 kb on - strand, within Atu3228at 244.424 kb on + strand, within Atu3228at 244.424 kb on + strand, within Atu3228at 244.447 kb on + strand, within Atu3228at 244.532 kb on + strand, within Atu3228at 244.670 kb on + strand, within Atu3228at 244.691 kb on - strand, within Atu3228at 244.759 kb on - strand, within Atu3228at 244.819 kb on + strand, within Atu3228at 244.994 kb on + strand, within Atu3228at 245.009 kb on + strand, within Atu3228at 245.087 kb on + strand, within Atu3228at 245.165 kb on - strand, within Atu3228at 245.197 kb on + strand, within Atu3228at 245.243 kb on + strand, within Atu3228at 245.243 kb on + strand, within Atu3228at 245.243 kb on + strand, within Atu3228at 245.251 kb on - strand, within Atu3228at 245.372 kb on - strandat 245.416 kb on - strandat 245.471 kb on - strandat 245.530 kb on + strandat 245.541 kb on - strandat 245.542 kb on + strandat 245.550 kb on - strandat 245.550 kb on - strandat 245.608 kb on + strandat 245.627 kb on + strandat 245.627 kb on + strandat 245.759 kb on + strand, within Atu3229at 245.845 kb on - strand, within Atu3229at 245.866 kb on - strand, within Atu3229at 245.868 kb on + strand, within Atu3229at 245.875 kb on - strand, within Atu3229at 245.917 kb on + strand, within Atu3229at 245.921 kb on + strand, within Atu3229at 246.069 kb on + strand, within Atu3229at 246.082 kb on - strand, within Atu3229at 246.108 kb on + strand, within Atu3229at 246.187 kb on + strand, within Atu3229at 246.223 kb on - strand, within Atu3229at 246.261 kb on - strand, within Atu3229at 246.371 kb on + strand, within Atu3229at 246.379 kb on - strand, within Atu3229at 246.390 kb on + strand, within Atu3229at 246.411 kb on - strand, within Atu3229at 246.516 kb on + strand, within Atu3229at 246.572 kb on - strand, within Atu3229

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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241,352 + +0.0
241,569 - Atu3227 0.19 +0.8
241,604 + Atu3227 0.23 +0.3
241,612 - Atu3227 0.24 -0.5
241,612 - Atu3227 0.24 -0.6
241,624 - Atu3227 0.25 +0.2
241,919 + Atu3227 0.57 +0.0
241,920 - Atu3227 0.57 -1.4
241,924 + Atu3227 0.57 +0.1
241,937 - Atu3227 0.59 +0.0
242,040 + Atu3227 0.70 -0.6
242,176 - Atu3227 0.84 -0.4
242,222 - Atu3227 0.89 -0.1
242,597 + +0.0
242,602 + +0.5
242,659 - +0.6
242,661 + Atu3228 0.10 +0.8
242,736 - Atu3228 0.12 -1.5
242,828 - Atu3228 0.15 -0.6
242,828 - Atu3228 0.15 +0.4
242,828 - Atu3228 0.15 +0.6
242,839 + Atu3228 0.15 -1.1
242,847 - Atu3228 0.16 +0.0
242,847 - Atu3228 0.16 -2.4
242,852 - Atu3228 0.16 -0.4
242,855 + Atu3228 0.16 -0.6
242,861 + Atu3228 0.16 +0.6
242,894 - Atu3228 0.17 +0.0
242,911 + Atu3228 0.18 +0.2
243,172 + Atu3228 0.26 -0.4
243,187 + Atu3228 0.26 -1.0
243,195 - Atu3228 0.26 -1.0
243,252 + Atu3228 0.28 -0.7
243,386 - Atu3228 0.32 +1.7
243,424 + Atu3228 0.33 -2.3
243,432 - Atu3228 0.34 -0.8
243,612 - Atu3228 0.39 -0.5
243,643 - Atu3228 0.40 +0.6
243,732 + Atu3228 0.43 -0.4
243,752 - Atu3228 0.43 -1.1
243,754 + Atu3228 0.43 +0.6
243,758 + Atu3228 0.43 +0.6
243,786 - Atu3228 0.44 -0.2
243,921 - Atu3228 0.48 -2.3
243,977 - Atu3228 0.50 +0.2
244,162 + Atu3228 0.56 -1.8
244,276 + Atu3228 0.59 +0.9
244,342 - Atu3228 0.61 -2.0
244,371 - Atu3228 0.62 +0.2
244,387 + Atu3228 0.63 +0.6
244,387 + Atu3228 0.63 +0.6
244,392 + Atu3228 0.63 -1.5
244,392 + Atu3228 0.63 +0.6
244,395 - Atu3228 0.63 -0.4
244,424 + Atu3228 0.64 -0.5
244,424 + Atu3228 0.64 -0.5
244,447 + Atu3228 0.65 -1.5
244,532 + Atu3228 0.67 +0.3
244,670 + Atu3228 0.71 -0.0
244,691 - Atu3228 0.72 -0.6
244,759 - Atu3228 0.74 -1.2
244,819 + Atu3228 0.76 -2.0
244,994 + Atu3228 0.81 -2.2
245,009 + Atu3228 0.82 -0.4
245,087 + Atu3228 0.84 -0.5
245,165 - Atu3228 0.86 -0.2
245,197 + Atu3228 0.87 -1.5
245,243 + Atu3228 0.89 -0.0
245,243 + Atu3228 0.89 +1.0
245,243 + Atu3228 0.89 +0.1
245,251 - Atu3228 0.89 -1.4
245,372 - -1.2
245,416 - -0.3
245,471 - -0.2
245,530 + +0.4
245,541 - -0.1
245,542 + -1.8
245,550 - -0.7
245,550 - -1.2
245,608 + +0.1
245,627 + -1.8
245,627 + +0.3
245,759 + Atu3229 0.11 +0.3
245,845 - Atu3229 0.17 -0.4
245,866 - Atu3229 0.18 -0.1
245,868 + Atu3229 0.19 -0.5
245,875 - Atu3229 0.19 -2.9
245,917 + Atu3229 0.22 +0.5
245,921 + Atu3229 0.22 +0.6
246,069 + Atu3229 0.33 +0.3
246,082 - Atu3229 0.34 -0.2
246,108 + Atu3229 0.35 -0.1
246,187 + Atu3229 0.41 +0.8
246,223 - Atu3229 0.44 +0.7
246,261 - Atu3229 0.46 +0.4
246,371 + Atu3229 0.54 +0.4
246,379 - Atu3229 0.55 -0.4
246,390 + Atu3229 0.55 +1.1
246,411 - Atu3229 0.57 -0.2
246,516 + Atu3229 0.64 -0.2
246,572 - Atu3229 0.68 +0.4

Or see this region's nucleotide sequence