Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3200 and Atu3201 are separated by 193 nucleotides Atu3201 and Atu3202 are separated by 129 nucleotides
Atu3200: Atu3200 - ribose ABC transporter ATPase, at 208,965 to 210,488
Atu3200
Atu3201: Atu3201 - TetR family transcriptional regulator, at 210,682 to 211,305
Atu3201
Atu3202: Atu3202 - RND multidrug efflux transporter, at 211,435 to 214,569
Atu3202
Position (kb) 210
211
212 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 209.696 kb on - strand, within Atu3200 at 209.728 kb on + strand, within Atu3200 at 209.728 kb on + strand, within Atu3200 at 209.736 kb on - strand, within Atu3200 at 209.886 kb on - strand, within Atu3200 at 209.910 kb on - strand, within Atu3200 at 209.928 kb on - strand, within Atu3200 at 209.992 kb on + strand, within Atu3200 at 210.247 kb on + strand, within Atu3200 at 210.255 kb on + strand, within Atu3200 at 210.369 kb on + strand at 210.386 kb on - strand at 210.419 kb on - strand at 210.445 kb on + strand at 210.450 kb on + strand at 210.453 kb on - strand at 210.484 kb on + strand at 210.534 kb on + strand at 210.663 kb on - strand at 210.671 kb on - strand at 210.673 kb on - strand at 210.680 kb on + strand at 210.680 kb on + strand at 210.719 kb on + strand at 210.742 kb on - strand at 210.778 kb on + strand, within Atu3201 at 210.778 kb on + strand, within Atu3201 at 210.778 kb on + strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.792 kb on - strand, within Atu3201 at 210.799 kb on - strand, within Atu3201 at 210.854 kb on + strand, within Atu3201 at 210.862 kb on - strand, within Atu3201 at 210.881 kb on + strand, within Atu3201 at 210.893 kb on + strand, within Atu3201 at 210.907 kb on + strand, within Atu3201 at 211.048 kb on - strand, within Atu3201 at 211.058 kb on - strand, within Atu3201 at 211.076 kb on - strand, within Atu3201 at 211.297 kb on - strand at 211.302 kb on - strand at 211.304 kb on + strand at 211.469 kb on + strand at 211.889 kb on - strand, within Atu3202 at 211.896 kb on + strand, within Atu3202 at 212.004 kb on + strand, within Atu3202 at 212.098 kb on - strand, within Atu3202 at 212.243 kb on + strand, within Atu3202
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 209,696 - Atu3200 0.48 -0.2 209,728 + Atu3200 0.50 -1.6 209,728 + Atu3200 0.50 -2.4 209,736 - Atu3200 0.51 +1.6 209,886 - Atu3200 0.60 +0.9 209,910 - Atu3200 0.62 +2.0 209,928 - Atu3200 0.63 -1.1 209,992 + Atu3200 0.67 -0.4 210,247 + Atu3200 0.84 -0.1 210,255 + Atu3200 0.85 -1.8 210,369 + -0.3 210,386 - -0.2 210,419 - -0.1 210,445 + -1.0 210,450 + -1.4 210,453 - -0.2 210,484 + -0.1 210,534 + +1.2 210,663 - -1.2 210,671 - -1.5 210,673 - -0.4 210,680 + +0.8 210,680 + -0.1 210,719 + +10.1 210,742 - +9.6 210,778 + Atu3201 0.15 +9.3 210,778 + Atu3201 0.15 +9.0 210,778 + Atu3201 0.15 +9.2 210,786 - Atu3201 0.17 +10.1 210,786 - Atu3201 0.17 +9.7 210,786 - Atu3201 0.17 +9.5 210,786 - Atu3201 0.17 +9.7 210,792 - Atu3201 0.18 +10.3 210,799 - Atu3201 0.19 +9.2 210,854 + Atu3201 0.28 +10.2 210,862 - Atu3201 0.29 +9.2 210,881 + Atu3201 0.32 +9.6 210,893 + Atu3201 0.34 +10.2 210,907 + Atu3201 0.36 +9.7 211,048 - Atu3201 0.59 +9.5 211,058 - Atu3201 0.60 +9.6 211,076 - Atu3201 0.63 +9.6 211,297 - +9.8 211,302 - +9.9 211,304 + +9.6 211,469 + -2.8 211,889 - Atu3202 0.14 -0.4 211,896 + Atu3202 0.15 -1.0 212,004 + Atu3202 0.18 -3.1 212,098 - Atu3202 0.21 -0.7 212,243 + Atu3202 0.26 -4.9
Or see this region's nucleotide sequence