Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3083 and Atu3084 overlap by 4 nucleotides Atu3084 and Atu3085 are separated by 151 nucleotides Atu3085 and Atu3086 are separated by 11 nucleotides Atu3086 and Atu3087 are separated by 3 nucleotides
Atu3083: Atu3083 - hypothetical protein, at 89,708 to 90,148
Atu3083
Atu3084: Atu3084 - RNA polymerase sigma factor, at 90,145 to 90,687
Atu3084
Atu3085: Atu3085 - hydantoin racemase, at 90,839 to 91,582
Atu3085
Atu3086: Atu3086 - spermidine/putrescine ABC transporter permease, at 91,594 to 92,412
Atu3086
Atu3087: Atu3087 - spermidine/putrescine ABC transporter permease, at 92,416 to 93,327
Atu3087
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 89.955 kb on - strand, within Atu3083 at 90.030 kb on + strand, within Atu3083 at 90.038 kb on - strand, within Atu3083 at 90.058 kb on + strand, within Atu3083 at 90.063 kb on + strand, within Atu3083 at 90.195 kb on + strand at 90.208 kb on - strand, within Atu3084 at 90.218 kb on + strand, within Atu3084 at 90.311 kb on - strand, within Atu3084 at 90.311 kb on - strand, within Atu3084 at 90.343 kb on + strand, within Atu3084 at 90.440 kb on + strand, within Atu3084 at 90.450 kb on + strand, within Atu3084 at 90.492 kb on + strand, within Atu3084 at 90.492 kb on + strand, within Atu3084 at 90.719 kb on - strand at 90.867 kb on + strand at 90.882 kb on + strand at 90.890 kb on - strand at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.969 kb on - strand, within Atu3085 at 90.969 kb on - strand, within Atu3085 at 91.020 kb on + strand, within Atu3085 at 91.173 kb on - strand, within Atu3085 at 91.262 kb on + strand, within Atu3085 at 91.348 kb on + strand, within Atu3085 at 91.385 kb on + strand, within Atu3085 at 91.392 kb on + strand, within Atu3085 at 91.401 kb on + strand, within Atu3085 at 91.554 kb on + strand at 91.623 kb on - strand at 91.640 kb on - strand at 91.758 kb on - strand, within Atu3086 at 91.785 kb on + strand, within Atu3086 at 91.785 kb on - strand, within Atu3086 at 91.797 kb on + strand, within Atu3086 at 91.830 kb on - strand, within Atu3086 at 91.865 kb on - strand, within Atu3086 at 91.922 kb on + strand, within Atu3086 at 92.015 kb on - strand, within Atu3086 at 92.130 kb on - strand, within Atu3086 at 92.252 kb on - strand, within Atu3086 at 92.262 kb on - strand, within Atu3086 at 92.332 kb on - strand at 92.355 kb on - strand at 92.414 kb on + strand at 92.414 kb on + strand at 92.422 kb on - strand at 92.422 kb on - strand at 92.431 kb on + strand at 92.439 kb on - strand at 92.469 kb on - strand at 92.479 kb on + strand at 92.484 kb on + strand at 92.484 kb on + strand at 92.581 kb on - strand, within Atu3087
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 89,955 - Atu3083 0.56 +1.6 90,030 + Atu3083 0.73 -0.7 90,038 - Atu3083 0.75 -1.1 90,058 + Atu3083 0.79 -1.8 90,063 + Atu3083 0.80 -1.0 90,195 + +0.0 90,208 - Atu3084 0.12 +0.2 90,218 + Atu3084 0.13 -0.6 90,311 - Atu3084 0.31 -0.6 90,311 - Atu3084 0.31 -1.4 90,343 + Atu3084 0.36 -0.4 90,440 + Atu3084 0.54 -0.8 90,450 + Atu3084 0.56 +1.0 90,492 + Atu3084 0.64 +0.0 90,492 + Atu3084 0.64 +0.2 90,719 - -0.0 90,867 + -0.7 90,882 + -2.4 90,890 - +0.3 90,961 + Atu3085 0.16 +0.9 90,961 + Atu3085 0.16 +2.8 90,961 + Atu3085 0.16 +1.2 90,961 + Atu3085 0.16 +1.7 90,969 - Atu3085 0.17 +1.6 90,969 - Atu3085 0.17 +0.3 91,020 + Atu3085 0.24 +1.3 91,173 - Atu3085 0.45 +0.2 91,262 + Atu3085 0.57 -1.0 91,348 + Atu3085 0.68 +1.8 91,385 + Atu3085 0.73 +1.0 91,392 + Atu3085 0.74 +0.6 91,401 + Atu3085 0.76 -1.2 91,554 + +0.0 91,623 - -0.1 91,640 - +0.1 91,758 - Atu3086 0.20 +0.6 91,785 + Atu3086 0.23 -0.2 91,785 - Atu3086 0.23 -0.4 91,797 + Atu3086 0.25 -1.4 91,830 - Atu3086 0.29 -1.0 91,865 - Atu3086 0.33 +0.5 91,922 + Atu3086 0.40 -1.7 92,015 - Atu3086 0.51 -0.2 92,130 - Atu3086 0.65 -0.7 92,252 - Atu3086 0.80 +1.3 92,262 - Atu3086 0.82 -0.7 92,332 - -0.9 92,355 - +1.0 92,414 + +0.4 92,414 + -0.5 92,422 - -2.8 92,422 - -0.7 92,431 + +0.6 92,439 - +0.5 92,469 - -0.2 92,479 + +0.7 92,484 + +2.1 92,484 + -1.5 92,581 - Atu3087 0.18 -0.3
Or see this region's nucleotide sequence