Strain Fitness in Agrobacterium fabrum C58 around Atu2589

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2587 and Atu2588 are separated by 1 nucleotidesAtu2588 and Atu2589 overlap by 4 nucleotidesAtu2589 and Atu2590 are separated by 72 nucleotides Atu2587: Atu2587 - ABC transporter, substrate binding protein (oligopeptide), at 2,563,153 to 2,565,054 Atu2587 Atu2588: Atu2588 - ABC transporter, membrane spanning protein (oligopeptide), at 2,565,056 to 2,566,054 Atu2588 Atu2589: Atu2589 - ABC transporter, membrane spanning protein (oligopeptide), at 2,566,051 to 2,567,226 Atu2589 Atu2590: Atu2590 - hypothetical protein, at 2,567,299 to 2,568,507 Atu2590 Position (kb) 2566 2567 2568Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 2565.121 kb on + strandat 2565.344 kb on + strand, within Atu2588at 2565.368 kb on + strand, within Atu2588at 2565.368 kb on + strand, within Atu2588at 2565.376 kb on - strand, within Atu2588at 2565.399 kb on + strand, within Atu2588at 2565.438 kb on + strand, within Atu2588at 2565.448 kb on - strand, within Atu2588at 2565.469 kb on + strand, within Atu2588at 2565.474 kb on + strand, within Atu2588at 2565.596 kb on + strand, within Atu2588at 2565.634 kb on + strand, within Atu2588at 2565.762 kb on + strand, within Atu2588at 2565.770 kb on - strand, within Atu2588at 2565.770 kb on - strand, within Atu2588at 2565.770 kb on - strand, within Atu2588at 2565.770 kb on - strand, within Atu2588at 2565.838 kb on - strand, within Atu2588at 2565.955 kb on - strandat 2565.981 kb on + strandat 2565.988 kb on + strandat 2566.038 kb on - strandat 2566.081 kb on + strandat 2566.245 kb on - strand, within Atu2589at 2566.263 kb on - strand, within Atu2589at 2566.263 kb on - strand, within Atu2589at 2566.432 kb on - strand, within Atu2589at 2566.605 kb on + strand, within Atu2589at 2566.636 kb on + strand, within Atu2589at 2566.694 kb on + strand, within Atu2589at 2566.694 kb on + strand, within Atu2589at 2566.694 kb on + strand, within Atu2589at 2566.694 kb on + strand, within Atu2589at 2566.694 kb on + strand, within Atu2589at 2566.702 kb on - strand, within Atu2589at 2566.757 kb on + strand, within Atu2589at 2566.793 kb on - strand, within Atu2589at 2566.828 kb on - strand, within Atu2589at 2566.844 kb on + strand, within Atu2589at 2566.852 kb on - strand, within Atu2589at 2566.956 kb on + strand, within Atu2589at 2566.988 kb on - strand, within Atu2589at 2567.126 kb on + strandat 2567.199 kb on + strandat 2567.279 kb on + strandat 2567.329 kb on + strandat 2567.329 kb on + strandat 2567.337 kb on - strandat 2567.387 kb on + strandat 2567.397 kb on + strandat 2567.411 kb on - strandat 2567.501 kb on + strand, within Atu2590at 2567.647 kb on - strand, within Atu2590at 2567.647 kb on - strand, within Atu2590at 2567.705 kb on + strand, within Atu2590at 2567.713 kb on - strand, within Atu2590at 2567.713 kb on - strand, within Atu2590at 2567.740 kb on - strand, within Atu2590at 2567.866 kb on + strand, within Atu2590at 2567.916 kb on + strand, within Atu2590at 2568.019 kb on - strand, within Atu2590at 2568.180 kb on - strand, within Atu2590

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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2,565,121 + +1.3
2,565,344 + Atu2588 0.29 +0.2
2,565,368 + Atu2588 0.31 -0.9
2,565,368 + Atu2588 0.31 +1.9
2,565,376 - Atu2588 0.32 +0.8
2,565,399 + Atu2588 0.34 -0.8
2,565,438 + Atu2588 0.38 +1.0
2,565,448 - Atu2588 0.39 +1.9
2,565,469 + Atu2588 0.41 +3.2
2,565,474 + Atu2588 0.42 +3.1
2,565,596 + Atu2588 0.54 +4.0
2,565,634 + Atu2588 0.58 +2.0
2,565,762 + Atu2588 0.71 +1.4
2,565,770 - Atu2588 0.71 +1.6
2,565,770 - Atu2588 0.71 +1.6
2,565,770 - Atu2588 0.71 +0.6
2,565,770 - Atu2588 0.71 +1.1
2,565,838 - Atu2588 0.78 +1.5
2,565,955 - +0.6
2,565,981 + +2.3
2,565,988 + +2.5
2,566,038 - -1.3
2,566,081 + +0.7
2,566,245 - Atu2589 0.16 +1.8
2,566,263 - Atu2589 0.18 +0.9
2,566,263 - Atu2589 0.18 +1.8
2,566,432 - Atu2589 0.32 +1.7
2,566,605 + Atu2589 0.47 +1.6
2,566,636 + Atu2589 0.50 +2.2
2,566,694 + Atu2589 0.55 +3.5
2,566,694 + Atu2589 0.55 +1.1
2,566,694 + Atu2589 0.55 +0.7
2,566,694 + Atu2589 0.55 +1.2
2,566,694 + Atu2589 0.55 +0.1
2,566,702 - Atu2589 0.55 +2.8
2,566,757 + Atu2589 0.60 +0.7
2,566,793 - Atu2589 0.63 +1.3
2,566,828 - Atu2589 0.66 +1.0
2,566,844 + Atu2589 0.67 +1.8
2,566,852 - Atu2589 0.68 +2.6
2,566,956 + Atu2589 0.77 -0.1
2,566,988 - Atu2589 0.80 +2.0
2,567,126 + +1.5
2,567,199 + +2.1
2,567,279 + -2.3
2,567,329 + -5.0
2,567,329 + -3.4
2,567,337 - -2.9
2,567,387 + -4.2
2,567,397 + +0.5
2,567,411 - -3.5
2,567,501 + Atu2590 0.17 -1.1
2,567,647 - Atu2590 0.29 -4.7
2,567,647 - Atu2590 0.29 -3.3
2,567,705 + Atu2590 0.34 -1.3
2,567,713 - Atu2590 0.34 -2.7
2,567,713 - Atu2590 0.34 -3.9
2,567,740 - Atu2590 0.36 -3.4
2,567,866 + Atu2590 0.47 -4.1
2,567,916 + Atu2590 0.51 -4.5
2,568,019 - Atu2590 0.60 -4.2
2,568,180 - Atu2590 0.73 -6.0

Or see this region's nucleotide sequence