Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2587 and Atu2588 are separated by 1 nucleotides Atu2588 and Atu2589 overlap by 4 nucleotides Atu2589 and Atu2590 are separated by 72 nucleotides
Atu2587: Atu2587 - ABC transporter, substrate binding protein (oligopeptide), at 2,563,153 to 2,565,054
Atu2587
Atu2588: Atu2588 - ABC transporter, membrane spanning protein (oligopeptide), at 2,565,056 to 2,566,054
Atu2588
Atu2589: Atu2589 - ABC transporter, membrane spanning protein (oligopeptide), at 2,566,051 to 2,567,226
Atu2589
Atu2590: Atu2590 - hypothetical protein, at 2,567,299 to 2,568,507
Atu2590
Position (kb)
2566
2567
2568 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 2565.121 kb on + strand at 2565.344 kb on + strand, within Atu2588 at 2565.368 kb on + strand, within Atu2588 at 2565.368 kb on + strand, within Atu2588 at 2565.376 kb on - strand, within Atu2588 at 2565.399 kb on + strand, within Atu2588 at 2565.438 kb on + strand, within Atu2588 at 2565.448 kb on - strand, within Atu2588 at 2565.469 kb on + strand, within Atu2588 at 2565.474 kb on + strand, within Atu2588 at 2565.596 kb on + strand, within Atu2588 at 2565.634 kb on + strand, within Atu2588 at 2565.762 kb on + strand, within Atu2588 at 2565.770 kb on - strand, within Atu2588 at 2565.770 kb on - strand, within Atu2588 at 2565.770 kb on - strand, within Atu2588 at 2565.770 kb on - strand, within Atu2588 at 2565.838 kb on - strand, within Atu2588 at 2565.955 kb on - strand at 2565.981 kb on + strand at 2565.988 kb on + strand at 2566.038 kb on - strand at 2566.081 kb on + strand at 2566.245 kb on - strand, within Atu2589 at 2566.263 kb on - strand, within Atu2589 at 2566.263 kb on - strand, within Atu2589 at 2566.432 kb on - strand, within Atu2589 at 2566.605 kb on + strand, within Atu2589 at 2566.636 kb on + strand, within Atu2589 at 2566.694 kb on + strand, within Atu2589 at 2566.694 kb on + strand, within Atu2589 at 2566.694 kb on + strand, within Atu2589 at 2566.694 kb on + strand, within Atu2589 at 2566.694 kb on + strand, within Atu2589 at 2566.702 kb on - strand, within Atu2589 at 2566.757 kb on + strand, within Atu2589 at 2566.793 kb on - strand, within Atu2589 at 2566.828 kb on - strand, within Atu2589 at 2566.844 kb on + strand, within Atu2589 at 2566.852 kb on - strand, within Atu2589 at 2566.956 kb on + strand, within Atu2589 at 2566.988 kb on - strand, within Atu2589 at 2567.126 kb on + strand at 2567.199 kb on + strand at 2567.279 kb on + strand at 2567.329 kb on + strand at 2567.329 kb on + strand at 2567.337 kb on - strand at 2567.387 kb on + strand at 2567.397 kb on + strand at 2567.411 kb on - strand at 2567.501 kb on + strand, within Atu2590 at 2567.647 kb on - strand, within Atu2590 at 2567.647 kb on - strand, within Atu2590 at 2567.705 kb on + strand, within Atu2590 at 2567.713 kb on - strand, within Atu2590 at 2567.713 kb on - strand, within Atu2590 at 2567.740 kb on - strand, within Atu2590 at 2567.866 kb on + strand, within Atu2590 at 2567.916 kb on + strand, within Atu2590 at 2568.019 kb on - strand, within Atu2590 at 2568.180 kb on - strand, within Atu2590
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 2,565,121 + +1.3 2,565,344 + Atu2588 0.29 +0.2 2,565,368 + Atu2588 0.31 -0.9 2,565,368 + Atu2588 0.31 +1.9 2,565,376 - Atu2588 0.32 +0.8 2,565,399 + Atu2588 0.34 -0.8 2,565,438 + Atu2588 0.38 +1.0 2,565,448 - Atu2588 0.39 +1.9 2,565,469 + Atu2588 0.41 +3.2 2,565,474 + Atu2588 0.42 +3.1 2,565,596 + Atu2588 0.54 +4.0 2,565,634 + Atu2588 0.58 +2.0 2,565,762 + Atu2588 0.71 +1.4 2,565,770 - Atu2588 0.71 +1.6 2,565,770 - Atu2588 0.71 +1.6 2,565,770 - Atu2588 0.71 +0.6 2,565,770 - Atu2588 0.71 +1.1 2,565,838 - Atu2588 0.78 +1.5 2,565,955 - +0.6 2,565,981 + +2.3 2,565,988 + +2.5 2,566,038 - -1.3 2,566,081 + +0.7 2,566,245 - Atu2589 0.16 +1.8 2,566,263 - Atu2589 0.18 +0.9 2,566,263 - Atu2589 0.18 +1.8 2,566,432 - Atu2589 0.32 +1.7 2,566,605 + Atu2589 0.47 +1.6 2,566,636 + Atu2589 0.50 +2.2 2,566,694 + Atu2589 0.55 +3.5 2,566,694 + Atu2589 0.55 +1.1 2,566,694 + Atu2589 0.55 +0.7 2,566,694 + Atu2589 0.55 +1.2 2,566,694 + Atu2589 0.55 +0.1 2,566,702 - Atu2589 0.55 +2.8 2,566,757 + Atu2589 0.60 +0.7 2,566,793 - Atu2589 0.63 +1.3 2,566,828 - Atu2589 0.66 +1.0 2,566,844 + Atu2589 0.67 +1.8 2,566,852 - Atu2589 0.68 +2.6 2,566,956 + Atu2589 0.77 -0.1 2,566,988 - Atu2589 0.80 +2.0 2,567,126 + +1.5 2,567,199 + +2.1 2,567,279 + -2.3 2,567,329 + -5.0 2,567,329 + -3.4 2,567,337 - -2.9 2,567,387 + -4.2 2,567,397 + +0.5 2,567,411 - -3.5 2,567,501 + Atu2590 0.17 -1.1 2,567,647 - Atu2590 0.29 -4.7 2,567,647 - Atu2590 0.29 -3.3 2,567,705 + Atu2590 0.34 -1.3 2,567,713 - Atu2590 0.34 -2.7 2,567,713 - Atu2590 0.34 -3.9 2,567,740 - Atu2590 0.36 -3.4 2,567,866 + Atu2590 0.47 -4.1 2,567,916 + Atu2590 0.51 -4.5 2,568,019 - Atu2590 0.60 -4.2 2,568,180 - Atu2590 0.73 -6.0
Or see this region's nucleotide sequence