Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2548 and Atu2549 are separated by 3 nucleotides Atu2549 and Atu2550 are separated by 199 nucleotides
Atu2548: Atu2548 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,519,211 to 2,520,161
Atu2548
Atu2549: Atu2549 - transcriptional regulator, TetR family, at 2,520,165 to 2,520,824
Atu2549
Atu2550: Atu2550 - RND multidrug efflux membrane permease, at 2,521,024 to 2,522,226
Atu2550
Position (kb)
2520
2521 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2519.197 kb on + strand at 2519.246 kb on + strand at 2519.278 kb on + strand at 2519.286 kb on - strand at 2519.286 kb on - strand at 2519.288 kb on + strand at 2519.332 kb on + strand, within Atu2548 at 2519.337 kb on + strand, within Atu2548 at 2519.368 kb on + strand, within Atu2548 at 2519.401 kb on - strand, within Atu2548 at 2519.406 kb on - strand, within Atu2548 at 2519.408 kb on + strand, within Atu2548 at 2519.430 kb on + strand, within Atu2548 at 2519.486 kb on - strand, within Atu2548 at 2519.494 kb on + strand, within Atu2548 at 2519.525 kb on + strand, within Atu2548 at 2519.533 kb on + strand, within Atu2548 at 2519.547 kb on + strand, within Atu2548 at 2519.549 kb on + strand, within Atu2548 at 2519.559 kb on + strand, within Atu2548 at 2519.565 kb on + strand, within Atu2548 at 2519.570 kb on + strand, within Atu2548 at 2519.578 kb on - strand, within Atu2548 at 2519.608 kb on + strand, within Atu2548 at 2519.681 kb on - strand, within Atu2548 at 2519.692 kb on - strand, within Atu2548 at 2519.725 kb on + strand, within Atu2548 at 2519.733 kb on - strand, within Atu2548 at 2519.735 kb on + strand, within Atu2548 at 2519.748 kb on - strand, within Atu2548 at 2519.756 kb on + strand, within Atu2548 at 2519.756 kb on + strand, within Atu2548 at 2519.756 kb on + strand, within Atu2548 at 2519.756 kb on + strand, within Atu2548 at 2519.764 kb on - strand, within Atu2548 at 2519.764 kb on - strand, within Atu2548 at 2519.764 kb on - strand, within Atu2548 at 2519.774 kb on - strand, within Atu2548 at 2519.799 kb on - strand, within Atu2548 at 2519.799 kb on - strand, within Atu2548 at 2519.877 kb on - strand, within Atu2548 at 2519.963 kb on + strand, within Atu2548 at 2519.990 kb on + strand, within Atu2548 at 2520.038 kb on - strand, within Atu2548 at 2520.044 kb on + strand, within Atu2548 at 2520.044 kb on + strand, within Atu2548 at 2520.044 kb on + strand, within Atu2548 at 2520.052 kb on - strand, within Atu2548 at 2520.052 kb on - strand, within Atu2548 at 2520.098 kb on - strand at 2520.133 kb on + strand at 2520.133 kb on + strand at 2520.155 kb on + strand at 2520.155 kb on + strand at 2520.155 kb on + strand at 2520.163 kb on - strand at 2520.344 kb on - strand, within Atu2549 at 2520.347 kb on - strand, within Atu2549 at 2520.349 kb on - strand, within Atu2549 at 2520.434 kb on + strand, within Atu2549 at 2520.457 kb on + strand, within Atu2549 at 2520.475 kb on + strand, within Atu2549 at 2520.504 kb on + strand, within Atu2549 at 2520.512 kb on - strand, within Atu2549 at 2520.554 kb on - strand, within Atu2549 at 2520.560 kb on - strand, within Atu2549 at 2520.562 kb on + strand, within Atu2549 at 2520.593 kb on + strand, within Atu2549 at 2520.635 kb on + strand, within Atu2549 at 2520.640 kb on + strand, within Atu2549 at 2520.651 kb on + strand, within Atu2549 at 2520.707 kb on + strand, within Atu2549 at 2520.710 kb on - strand, within Atu2549 at 2520.711 kb on + strand, within Atu2549 at 2520.806 kb on - strand at 2520.866 kb on + strand at 2520.866 kb on + strand at 2520.874 kb on - strand at 2520.874 kb on - strand at 2520.881 kb on - strand at 2520.897 kb on + strand at 2520.926 kb on + strand at 2520.942 kb on - strand at 2521.188 kb on - strand, within Atu2550 at 2521.188 kb on - strand, within Atu2550 at 2521.334 kb on - strand, within Atu2550 at 2521.334 kb on - strand, within Atu2550 at 2521.360 kb on + strand, within Atu2550 at 2521.406 kb on - strand, within Atu2550 at 2521.406 kb on - strand, within Atu2550 at 2521.423 kb on - strand, within Atu2550 at 2521.496 kb on - strand, within Atu2550 at 2521.498 kb on + strand, within Atu2550 at 2521.503 kb on + strand, within Atu2550 at 2521.503 kb on + strand, within Atu2550 at 2521.503 kb on + strand, within Atu2550 at 2521.506 kb on - strand, within Atu2550 at 2521.511 kb on - strand, within Atu2550 at 2521.535 kb on + strand, within Atu2550 at 2521.569 kb on - strand, within Atu2550 at 2521.621 kb on - strand, within Atu2550 at 2521.638 kb on - strand, within Atu2550 at 2521.639 kb on + strand, within Atu2550 at 2521.664 kb on + strand, within Atu2550 at 2521.672 kb on - strand, within Atu2550 at 2521.726 kb on - strand, within Atu2550 at 2521.726 kb on - strand, within Atu2550 at 2521.726 kb on - strand, within Atu2550
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 2,519,197 + +0.7 2,519,246 + -0.8 2,519,278 + +0.9 2,519,286 - +3.2 2,519,286 - +1.5 2,519,288 + +1.2 2,519,332 + Atu2548 0.13 +2.5 2,519,337 + Atu2548 0.13 +1.5 2,519,368 + Atu2548 0.17 +0.6 2,519,401 - Atu2548 0.20 +1.7 2,519,406 - Atu2548 0.21 +0.5 2,519,408 + Atu2548 0.21 +0.6 2,519,430 + Atu2548 0.23 +4.2 2,519,486 - Atu2548 0.29 +2.6 2,519,494 + Atu2548 0.30 +0.8 2,519,525 + Atu2548 0.33 +1.5 2,519,533 + Atu2548 0.34 +1.8 2,519,547 + Atu2548 0.35 +0.6 2,519,549 + Atu2548 0.36 -0.2 2,519,559 + Atu2548 0.37 +1.9 2,519,565 + Atu2548 0.37 +3.1 2,519,570 + Atu2548 0.38 -1.6 2,519,578 - Atu2548 0.39 -1.3 2,519,608 + Atu2548 0.42 +1.1 2,519,681 - Atu2548 0.49 +3.1 2,519,692 - Atu2548 0.51 +2.3 2,519,725 + Atu2548 0.54 -0.4 2,519,733 - Atu2548 0.55 +1.5 2,519,735 + Atu2548 0.55 +2.2 2,519,748 - Atu2548 0.56 +2.7 2,519,756 + Atu2548 0.57 -0.3 2,519,756 + Atu2548 0.57 +1.0 2,519,756 + Atu2548 0.57 +1.8 2,519,756 + Atu2548 0.57 +0.4 2,519,764 - Atu2548 0.58 +4.0 2,519,764 - Atu2548 0.58 +2.0 2,519,764 - Atu2548 0.58 +1.8 2,519,774 - Atu2548 0.59 +1.7 2,519,799 - Atu2548 0.62 -1.7 2,519,799 - Atu2548 0.62 +1.8 2,519,877 - Atu2548 0.70 +1.5 2,519,963 + Atu2548 0.79 -0.5 2,519,990 + Atu2548 0.82 +1.5 2,520,038 - Atu2548 0.87 +3.3 2,520,044 + Atu2548 0.88 -0.2 2,520,044 + Atu2548 0.88 +0.7 2,520,044 + Atu2548 0.88 +1.5 2,520,052 - Atu2548 0.88 +1.9 2,520,052 - Atu2548 0.88 +1.8 2,520,098 - +2.2 2,520,133 + +0.7 2,520,133 + +1.0 2,520,155 + -1.3 2,520,155 + +1.5 2,520,155 + -1.0 2,520,163 - -0.1 2,520,344 - Atu2549 0.27 +2.5 2,520,347 - Atu2549 0.28 +3.5 2,520,349 - Atu2549 0.28 +1.9 2,520,434 + Atu2549 0.41 +1.5 2,520,457 + Atu2549 0.44 +2.3 2,520,475 + Atu2549 0.47 -0.3 2,520,504 + Atu2549 0.51 +2.2 2,520,512 - Atu2549 0.53 +2.5 2,520,554 - Atu2549 0.59 +3.0 2,520,560 - Atu2549 0.60 +2.8 2,520,562 + Atu2549 0.60 +2.6 2,520,593 + Atu2549 0.65 +1.0 2,520,635 + Atu2549 0.71 +2.0 2,520,640 + Atu2549 0.72 +3.1 2,520,651 + Atu2549 0.74 +2.6 2,520,707 + Atu2549 0.82 +0.8 2,520,710 - Atu2549 0.83 +2.4 2,520,711 + Atu2549 0.83 +2.5 2,520,806 - -1.3 2,520,866 + -0.3 2,520,866 + -0.8 2,520,874 - -2.1 2,520,874 - +1.5 2,520,881 - -1.0 2,520,897 + -1.1 2,520,926 + -2.3 2,520,942 - -3.5 2,521,188 - Atu2550 0.14 -0.8 2,521,188 - Atu2550 0.14 -0.5 2,521,334 - Atu2550 0.26 -1.3 2,521,334 - Atu2550 0.26 +1.2 2,521,360 + Atu2550 0.28 -0.9 2,521,406 - Atu2550 0.32 -1.8 2,521,406 - Atu2550 0.32 -2.6 2,521,423 - Atu2550 0.33 -0.1 2,521,496 - Atu2550 0.39 +0.5 2,521,498 + Atu2550 0.39 -1.5 2,521,503 + Atu2550 0.40 -2.8 2,521,503 + Atu2550 0.40 -4.1 2,521,503 + Atu2550 0.40 -0.5 2,521,506 - Atu2550 0.40 -2.2 2,521,511 - Atu2550 0.40 -1.8 2,521,535 + Atu2550 0.42 -0.7 2,521,569 - Atu2550 0.45 -1.7 2,521,621 - Atu2550 0.50 -2.7 2,521,638 - Atu2550 0.51 -0.6 2,521,639 + Atu2550 0.51 -0.6 2,521,664 + Atu2550 0.53 -1.0 2,521,672 - Atu2550 0.54 -3.5 2,521,726 - Atu2550 0.58 -0.8 2,521,726 - Atu2550 0.58 -2.4 2,521,726 - Atu2550 0.58 -3.5
Or see this region's nucleotide sequence