Strain Fitness in Agrobacterium fabrum C58 around Atu2428

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
2,399,551	-		Atu2427	0.29	-1.3
2,399,627	-		Atu2427	0.38	-0.4
2,399,643	-		Atu2427	0.40	+0.7
2,399,651	-		Atu2427	0.40	-0.4
2,399,690	+		Atu2427	0.45	+2.1
2,399,714	+		Atu2427	0.47	+0.3
2,399,824	-		Atu2427	0.60	+0.9
2,399,947	+		Atu2427	0.73	-0.6
2,400,143	+				+0.6
2,400,151	-				-2.3
2,400,173	+				-1.9
2,400,248	+				+0.0
2,400,431	+				-0.6
2,400,502	-				+0.3
2,400,551	+				-2.7
2,400,614	+		Atu2428	0.16	+0.2
2,400,641	+		Atu2428	0.19	-1.8
2,400,840	-		Atu2428	0.42	-1.2
2,400,904	-		Atu2428	0.50	-1.6
2,400,904	-		Atu2428	0.50	-2.1
2,400,911	+		Atu2428	0.51	-1.1
2,400,911	+		Atu2428	0.51	-1.1
2,400,914	-		Atu2428	0.51	-1.5
2,401,013	-		Atu2428	0.63	-0.8
2,401,063	+		Atu2428	0.69	-0.7
2,401,072	+		Atu2428	0.70	-0.3
2,401,180	+		Atu2428	0.83	-2.0
2,401,185	+		Atu2428	0.83	-2.1
2,401,188	-		Atu2428	0.84	-1.7
2,401,224	+		Atu2428	0.88	-2.0
2,401,321	+				-0.6
2,401,336	-				-0.2
2,401,338	-				+0.5
2,401,340	+				+0.1
2,401,340	+				+1.8
2,401,348	-				-0.7
2,401,348	-				-0.3
2,401,366	+				+0.1
2,401,376	+				+0.7
2,401,384	-				-0.1
2,401,384	-				+0.6
2,401,408	-				+2.5
2,401,408	-				+0.2
2,401,421	+				-0.1
2,401,452	+				+0.9
2,401,474	+				-0.0
2,401,480	-				-0.9
2,401,480	-				-0.4
2,401,482	+				+0.8
2,401,490	-				+1.8
2,401,491	-				-1.0
2,401,547	+				+1.7
2,401,547	+				-0.3
2,401,555	-				+0.3
2,401,555	-				-0.3
2,401,570	-				-1.0
2,401,570	-				+1.1
2,401,570	-				+0.4
2,401,630	-				-1.2
2,401,677	+				+0.7
2,401,709	+				-1.8
2,401,731	+				-1.6
2,401,731	+				+0.6
2,401,735	+				+0.6
2,401,735	+				-0.4
2,401,752	+				+0.0
2,401,790	-		Atu8178	0.12	-1.3
2,401,790	-		Atu8178	0.12	-0.5
2,401,823	+		Atu8178	0.15	-1.1
2,401,924	+		Atu8178	0.25	+1.2
2,401,950	-		Atu8178	0.27	+1.1
2,402,066	+		Atu8178	0.38	-0.6
2,402,086	+		Atu8178	0.40	-1.7
2,402,094	+		Atu8178	0.41	+0.5
2,402,094	-		Atu8178	0.41	+0.3
2,402,102	+		Atu8178	0.42	-0.2
2,402,102	-		Atu8178	0.42	-2.0
2,402,102	-		Atu8178	0.42	-1.1
2,402,127	-		Atu8178	0.44	-0.4
2,402,146	+		Atu8178	0.46	-0.7
2,402,252	+		Atu8178	0.56	+2.1
2,402,267	+		Atu8178	0.58	-0.8