Strain Fitness in Agrobacterium fabrum C58 around Atu1979

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,944,698	-		Atu1977	0.86	+0.2
1,944,699	-		Atu1977	0.86	-2.0
1,944,721	-		Atu1977	0.87	-0.2
1,944,774	-				-0.4
1,944,783	+				+0.7
1,944,791	-				-0.8
1,944,793	+				+1.6
1,944,813	-				-1.3
1,944,892	+				+0.5
1,944,904	+				-2.7
1,944,929	+				-0.9
1,944,936	+				+2.2
1,944,944	-				+0.6
1,945,012	+		Atu1978	0.15	-0.0
1,945,020	-		Atu1978	0.16	+0.6
1,945,109	-		Atu1978	0.26	-0.6
1,945,120	+		Atu1978	0.28	-0.6
1,945,213	-		Atu1978	0.39	+0.2
1,945,213	-		Atu1978	0.39	+0.8
1,945,231	-		Atu1978	0.41	+0.1
1,945,231	-		Atu1978	0.41	+0.4
1,945,489	-		Atu1978	0.73	+0.7
1,945,518	-		Atu1978	0.76	+1.6
1,945,603	+		Atu1978	0.87	-0.4
1,945,666	+				-0.8
1,945,666	+				-0.7
1,945,674	-				-3.5
1,945,734	-				+0.3
1,945,827	-		Atu1979	0.10	-0.0
1,945,922	+		Atu1979	0.18	-0.2
1,945,970	+		Atu1979	0.22	+0.3
1,945,978	-		Atu1979	0.23	-0.8
1,945,988	-		Atu1979	0.24	-0.6
1,946,077	+		Atu1979	0.31	+0.6
1,946,114	+		Atu1979	0.34	-0.9
1,946,164	+		Atu1979	0.38	-0.0
1,946,164	+		Atu1979	0.38	-1.8
1,946,188	-		Atu1979	0.40	+1.8
1,946,227	-		Atu1979	0.43	-0.8
1,946,227	-		Atu1979	0.43	+0.2
1,946,319	-		Atu1979	0.50	+0.4
1,946,347	+		Atu1979	0.53	-0.5
1,946,370	-		Atu1979	0.55	+0.9
1,946,390	-		Atu1979	0.56	+1.5
1,946,437	+		Atu1979	0.60	-0.4
1,946,444	+		Atu1979	0.61	+1.9
1,946,458	-		Atu1979	0.62	+0.3
1,946,565	-		Atu1979	0.70	+0.2
1,946,627	+		Atu1979	0.75	-0.4
1,946,635	-		Atu1979	0.76	-0.0
1,946,641	-		Atu1979	0.76	+1.7
1,946,676	-		Atu1979	0.79	-0.3
1,946,750	+		Atu1979	0.85	-0.0
1,946,750	+		Atu1979	0.85	-0.9
1,946,750	+		Atu1979	0.85	+2.0
1,946,750	+		Atu1979	0.85	+0.7
1,946,750	+		Atu1979	0.85	+0.1
1,946,750	+		Atu1979	0.85	-1.6
1,946,806	+		Atu1979	0.90	-0.4
1,946,821	+				+0.8
1,946,851	-				-0.7
1,946,909	+				+1.6
1,946,914	+				+0.8
1,946,922	-				-0.4
1,946,982	+				-1.0
1,946,990	-				-1.0
1,946,995	+				+1.0
1,947,001	-		Atu1980	0.11	-1.6
1,947,001	-		Atu1980	0.11	+0.1
1,947,119	+		Atu1980	0.43	-0.8
1,947,208	+		Atu1980	0.66	-1.2
1,947,299	+				+0.7
1,947,310	-				-2.1
1,947,316	+				-1.6
1,947,317	-				+0.6
1,947,528	-		Atu1981	0.35	+1.0
1,947,529	+		Atu1981	0.35	-0.4
1,947,534	+		Atu1981	0.37	-1.5
1,947,542	+		Atu1981	0.38	-0.6
1,947,574	+		Atu1981	0.46	+1.2
1,947,575	-		Atu1981	0.46	-2.3
1,947,601	-		Atu1981	0.52	-1.9
1,947,606	+		Atu1981	0.53	+0.2
1,947,614	-		Atu1981	0.55	+0.6
1,947,614	-		Atu1981	0.55	-0.9
1,947,644	+		Atu1981	0.62	-0.9
1,947,644	+		Atu1981	0.62	+0.4
1,947,644	+		Atu1981	0.62	-0.6
1,947,652	-		Atu1981	0.64	+0.1
1,947,675	-		Atu1981	0.69	+0.2
1,947,724	-		Atu1981	0.81	-0.3
1,947,821	-				+0.1
1,947,881	+				-3.0