Strain Fitness in Agrobacterium fabrum C58 around Atu1977

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,942,597	+				+1.6
1,942,597	+				-1.6
1,942,597	+				+0.6
1,942,605	-				+1.8
1,942,688	+		Atu1975	0.18	-0.0
1,942,712	+		Atu1975	0.21	-0.8
1,942,712	+		Atu1975	0.21	-0.8
1,942,871	+		Atu1975	0.41	-1.2
1,943,044	+		Atu1975	0.63	+0.3
1,943,044	+		Atu1975	0.63	+0.2
1,943,061	+		Atu1975	0.65	-0.0
1,943,084	-		Atu1975	0.68	+0.9
1,943,142	-		Atu1975	0.76	-0.1
1,943,242	-		Atu1975	0.88	+0.2
1,943,266	+				-0.8
1,943,329	-				+0.8
1,943,332	+				+0.5
1,943,337	+				-0.5
1,943,360	+				+1.5
1,943,456	+				-0.4
1,943,482	-				-0.8
1,943,482	-				-0.3
1,943,484	+				-0.3
1,943,487	-				+1.6
1,943,525	-				-1.4
1,943,664	+		Atu1977	0.10	+0.6
1,943,669	+		Atu1977	0.11	-0.0
1,943,672	-		Atu1977	0.11	+1.1
1,943,677	-		Atu1977	0.11	+0.8
1,943,677	-		Atu1977	0.11	-0.6
1,943,694	+		Atu1977	0.12	+1.6
1,943,711	+		Atu1977	0.14	+1.4
1,943,739	-		Atu1977	0.16	+2.0
1,943,802	+		Atu1977	0.20	+0.6
1,943,921	-		Atu1977	0.29	-0.5
1,944,016	-		Atu1977	0.36	+0.5
1,944,043	-		Atu1977	0.38	-0.6
1,944,062	+		Atu1977	0.39	+1.4
1,944,168	+		Atu1977	0.47	+0.6
1,944,238	-		Atu1977	0.52	+0.2
1,944,271	+		Atu1977	0.54	-0.2
1,944,279	-		Atu1977	0.55	+0.2
1,944,281	+		Atu1977	0.55	+0.3
1,944,289	-		Atu1977	0.56	+1.6
1,944,344	+		Atu1977	0.60	-0.9
1,944,350	+		Atu1977	0.60	+0.5
1,944,397	-		Atu1977	0.64	+0.8
1,944,404	-		Atu1977	0.64	+0.4
1,944,404	-		Atu1977	0.64	+0.1
1,944,474	+		Atu1977	0.69	+0.2
1,944,474	+		Atu1977	0.69	+1.2
1,944,482	-		Atu1977	0.70	+1.0
1,944,500	+		Atu1977	0.71	+0.3
1,944,500	+		Atu1977	0.71	+0.1
1,944,541	+		Atu1977	0.74	-1.2
1,944,541	+		Atu1977	0.74	-0.0
1,944,549	-		Atu1977	0.75	+0.7
1,944,549	-		Atu1977	0.75	+0.8
1,944,698	-		Atu1977	0.86	+0.2
1,944,699	-		Atu1977	0.86	-2.0
1,944,721	-		Atu1977	0.87	-0.2
1,944,774	-				-0.4
1,944,783	+				+0.7
1,944,791	-				-0.8
1,944,793	+				+1.6
1,944,813	-				-1.3
1,944,892	+				+0.5
1,944,904	+				-2.7
1,944,929	+				-0.9
1,944,936	+				+2.2
1,944,944	-				+0.6
1,945,012	+		Atu1978	0.15	-0.0
1,945,020	-		Atu1978	0.16	+0.6
1,945,109	-		Atu1978	0.26	-0.6
1,945,120	+		Atu1978	0.28	-0.6
1,945,213	-		Atu1978	0.39	+0.2
1,945,213	-		Atu1978	0.39	+0.8
1,945,231	-		Atu1978	0.41	+0.1
1,945,231	-		Atu1978	0.41	+0.4
1,945,489	-		Atu1978	0.73	+0.7
1,945,518	-		Atu1978	0.76	+1.6
1,945,603	+		Atu1978	0.87	-0.4
1,945,666	+				-0.8
1,945,666	+				-0.7
1,945,674	-				-3.5
1,945,734	-				+0.3
1,945,827	-		Atu1979	0.10	-0.0