Strain Fitness in Agrobacterium fabrum C58 around Atu1557

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,543,563	-				+0.3
1,543,633	-				-0.6
1,544,349	+				+0.3
1,544,455	+				-0.5
1,544,455	+				+0.2
1,544,463	-				+0.7
1,544,603	+		Atu1557	0.15	+1.5
1,544,603	+		Atu1557	0.15	+2.3
1,544,604	+		Atu1557	0.15	-1.3
1,544,612	-		Atu1557	0.16	-1.0
1,544,632	+		Atu1557	0.18	+0.9
1,544,680	+		Atu1557	0.22	-2.2
1,544,738	+		Atu1557	0.28	-1.8
1,544,911	+		Atu1557	0.44	+0.7
1,544,911	+		Atu1557	0.44	-0.6
1,544,916	+		Atu1557	0.45	+0.7
1,544,919	-		Atu1557	0.45	+0.0
1,545,027	+		Atu1557	0.55	-0.3
1,545,246	+		Atu1557	0.75	+0.7
1,545,307	+		Atu1557	0.81	-1.1
1,545,422	-				-0.2
1,545,501	+				+0.6
1,545,517	-				+1.3
1,545,565	-				+0.5
1,545,572	-				+0.7
1,545,593	-				+0.3
1,545,614	+				+0.3
1,545,622	-				+1.5
1,545,766	-		Atu1558	0.16	+0.7
1,545,780	+		Atu1558	0.18	+0.8
1,545,793	-		Atu1558	0.20	-0.0
1,545,793	-		Atu1558	0.20	-0.1
1,546,092	+		Atu1558	0.53	+0.1
1,546,444	+				+0.0
1,546,481	-				-1.3
1,546,507	-				-0.3