Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0958 and Atu0959 are separated by 176 nucleotides Atu0959 and Atu0960 are separated by 7 nucleotides
Atu0958: Atu0958 - hypothetical protein, at 947,277 to 948,131
Atu0958
Atu0959: Atu0959 - hypothetical protein, at 948,308 to 948,703
Atu0959
Atu0960: Atu0960 - MFS permease, at 948,711 to 949,817
Atu0960
Position (kb) 948
949 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 947.362 kb on - strand at 947.399 kb on + strand, within Atu0958 at 947.407 kb on + strand, within Atu0958 at 947.407 kb on + strand, within Atu0958 at 947.407 kb on + strand, within Atu0958 at 947.407 kb on - strand, within Atu0958 at 947.415 kb on - strand, within Atu0958 at 947.456 kb on + strand, within Atu0958 at 947.456 kb on + strand, within Atu0958 at 947.513 kb on + strand, within Atu0958 at 947.521 kb on - strand, within Atu0958 at 947.532 kb on + strand, within Atu0958 at 947.551 kb on + strand, within Atu0958 at 947.642 kb on - strand, within Atu0958 at 947.682 kb on + strand, within Atu0958 at 947.724 kb on - strand, within Atu0958 at 947.761 kb on - strand, within Atu0958 at 947.826 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.870 kb on + strand, within Atu0958 at 947.873 kb on - strand, within Atu0958 at 947.959 kb on - strand, within Atu0958 at 947.967 kb on - strand, within Atu0958 at 948.022 kb on + strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.056 kb on + strand at 948.064 kb on - strand at 948.066 kb on + strand at 948.074 kb on - strand at 948.089 kb on - strand at 948.124 kb on + strand at 948.137 kb on + strand at 948.139 kb on + strand at 948.230 kb on - strand at 948.317 kb on + strand at 948.317 kb on + strand at 948.317 kb on + strand at 948.325 kb on - strand at 948.370 kb on + strand, within Atu0959 at 948.417 kb on + strand, within Atu0959 at 948.417 kb on + strand, within Atu0959 at 948.419 kb on + strand, within Atu0959 at 948.425 kb on - strand, within Atu0959 at 948.586 kb on + strand, within Atu0959 at 948.711 kb on - strand at 948.773 kb on + strand at 948.821 kb on - strand at 948.883 kb on + strand, within Atu0960 at 948.891 kb on + strand, within Atu0960 at 948.894 kb on + strand, within Atu0960 at 949.161 kb on - strand, within Atu0960 at 949.182 kb on - strand, within Atu0960 at 949.219 kb on + strand, within Atu0960 at 949.311 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.402 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.587 kb on + strand, within Atu0960 at 949.595 kb on - strand, within Atu0960 at 949.600 kb on - strand, within Atu0960 at 949.602 kb on - strand, within Atu0960 at 949.629 kb on + strand, within Atu0960 at 949.678 kb on + strand, within Atu0960
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 947,362 - +0.9 947,399 + Atu0958 0.14 -1.8 947,407 + Atu0958 0.15 -0.1 947,407 + Atu0958 0.15 -0.7 947,407 + Atu0958 0.15 +0.1 947,407 - Atu0958 0.15 -0.2 947,415 - Atu0958 0.16 -1.9 947,456 + Atu0958 0.21 -1.2 947,456 + Atu0958 0.21 +0.4 947,513 + Atu0958 0.28 -0.5 947,521 - Atu0958 0.29 -1.8 947,532 + Atu0958 0.30 +0.5 947,551 + Atu0958 0.32 +1.6 947,642 - Atu0958 0.43 -0.7 947,682 + Atu0958 0.47 +1.2 947,724 - Atu0958 0.52 -0.9 947,761 - Atu0958 0.57 +0.5 947,826 - Atu0958 0.64 +0.6 947,831 - Atu0958 0.65 -1.5 947,831 - Atu0958 0.65 -0.3 947,865 + Atu0958 0.69 -0.1 947,865 + Atu0958 0.69 +0.3 947,870 + Atu0958 0.69 +0.3 947,873 - Atu0958 0.70 +0.6 947,959 - Atu0958 0.80 -0.9 947,967 - Atu0958 0.81 +1.1 948,022 + Atu0958 0.87 +3.8 948,030 - Atu0958 0.88 -0.4 948,030 - Atu0958 0.88 -0.2 948,056 + +0.6 948,064 - +0.1 948,066 + +0.1 948,074 - -0.9 948,089 - +0.9 948,124 + +0.7 948,137 + -0.4 948,139 + +1.2 948,230 - +0.1 948,317 + -0.6 948,317 + -2.4 948,317 + +1.2 948,325 - +1.1 948,370 + Atu0959 0.16 +0.8 948,417 + Atu0959 0.28 +0.6 948,417 + Atu0959 0.28 +1.1 948,419 + Atu0959 0.28 +0.2 948,425 - Atu0959 0.30 -0.1 948,586 + Atu0959 0.70 +1.2 948,711 - -1.5 948,773 + -1.2 948,821 - -0.6 948,883 + Atu0960 0.16 -0.1 948,891 + Atu0960 0.16 +1.1 948,894 + Atu0960 0.17 +0.8 949,161 - Atu0960 0.41 -0.7 949,182 - Atu0960 0.43 +0.1 949,219 + Atu0960 0.46 +4.6 949,311 + Atu0960 0.54 -1.8 949,320 + Atu0960 0.55 +1.1 949,320 + Atu0960 0.55 -0.5 949,402 - Atu0960 0.62 +0.3 949,580 - Atu0960 0.79 +0.9 949,580 - Atu0960 0.79 +1.6 949,587 + Atu0960 0.79 -0.7 949,595 - Atu0960 0.80 -0.4 949,600 - Atu0960 0.80 -1.2 949,602 - Atu0960 0.80 -0.5 949,629 + Atu0960 0.83 -0.6 949,678 + Atu0960 0.87 -0.2
Or see this region's nucleotide sequence