Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0238 and Atu0239 overlap by 4 nucleotides Atu0239 and Atu0240 overlap by 26 nucleotides Atu0240 and Atu0241 are separated by 67 nucleotides
Atu0238: Atu0238 - oxidoreductase, at 237,803 to 238,696
Atu0238
Atu0239: Atu0239 - transcriptional regulator, AraC family, at 238,693 to 239,589
Atu0239
Atu0240: Atu0240 - hypothetical protein, at 239,564 to 239,971
Atu0240
Atu0241: Atu0241 - GTP-binding protein LepA, at 240,039 to 241,865
Atu0241
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1 at 238.018 kb on + strand, within Atu0238 at 238.029 kb on + strand, within Atu0238 at 238.033 kb on - strand, within Atu0238 at 238.056 kb on + strand, within Atu0238 at 238.059 kb on - strand, within Atu0238 at 238.110 kb on + strand, within Atu0238 at 238.126 kb on + strand, within Atu0238 at 238.134 kb on + strand, within Atu0238 at 238.184 kb on + strand, within Atu0238 at 238.315 kb on + strand, within Atu0238 at 238.437 kb on + strand, within Atu0238 at 238.514 kb on + strand, within Atu0238 at 238.631 kb on - strand at 238.695 kb on + strand at 238.708 kb on + strand at 238.880 kb on - strand, within Atu0239 at 238.935 kb on + strand, within Atu0239 at 238.943 kb on - strand, within Atu0239 at 238.993 kb on + strand, within Atu0239 at 239.001 kb on - strand, within Atu0239 at 239.051 kb on + strand, within Atu0239 at 239.099 kb on - strand, within Atu0239 at 239.194 kb on + strand, within Atu0239 at 239.223 kb on + strand, within Atu0239 at 239.231 kb on - strand, within Atu0239 at 239.235 kb on - strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.464 kb on - strand, within Atu0239 at 239.509 kb on + strand at 239.512 kb on - strand at 239.660 kb on - strand, within Atu0240 at 239.761 kb on - strand, within Atu0240 at 239.820 kb on - strand, within Atu0240 at 239.820 kb on - strand, within Atu0240 at 239.952 kb on - strand at 240.010 kb on + strand at 240.018 kb on - strand at 240.018 kb on - strand at 240.454 kb on + strand, within Atu0241
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 238,018 + Atu0238 0.24 +0.1 238,029 + Atu0238 0.25 +0.9 238,033 - Atu0238 0.26 -0.3 238,056 + Atu0238 0.28 -0.0 238,059 - Atu0238 0.29 -0.2 238,110 + Atu0238 0.34 -0.3 238,126 + Atu0238 0.36 -1.5 238,134 + Atu0238 0.37 -1.3 238,184 + Atu0238 0.43 -0.2 238,315 + Atu0238 0.57 -2.3 238,437 + Atu0238 0.71 +0.7 238,514 + Atu0238 0.80 +0.1 238,631 - +0.0 238,695 + +0.6 238,708 + -0.7 238,880 - Atu0239 0.21 +1.1 238,935 + Atu0239 0.27 +0.5 238,943 - Atu0239 0.28 +0.1 238,993 + Atu0239 0.33 +0.3 239,001 - Atu0239 0.34 +0.4 239,051 + Atu0239 0.40 -0.1 239,099 - Atu0239 0.45 -1.8 239,194 + Atu0239 0.56 -0.7 239,223 + Atu0239 0.59 -0.1 239,231 - Atu0239 0.60 -0.7 239,235 - Atu0239 0.60 -0.7 239,461 + Atu0239 0.86 -1.4 239,461 + Atu0239 0.86 -2.2 239,464 - Atu0239 0.86 -0.9 239,509 + -2.1 239,512 - -0.9 239,660 - Atu0240 0.24 -0.4 239,761 - Atu0240 0.48 +0.8 239,820 - Atu0240 0.63 +1.1 239,820 - Atu0240 0.63 -0.1 239,952 - -0.3 240,010 + -2.6 240,018 - +0.6 240,018 - +0.3 240,454 + Atu0241 0.23 +1.5
Or see this region's nucleotide sequence