Strain Fitness in Agrobacterium fabrum C58 around Atu0036
Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 12.5 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 38,329 | - | Atu0035 | 0.46 | -0.1 | |
| 38,406 | + | Atu0035 | 0.51 | -1.9 | |
| 38,551 | - | Atu0035 | 0.60 | +1.5 | |
| 38,564 | - | Atu0035 | 0.61 | +1.8 | |
| 38,572 | - | Atu0035 | 0.61 | -0.8 | |
| 38,637 | - | Atu0035 | 0.65 | +0.2 | |
| 38,664 | - | Atu0035 | 0.67 | -0.3 | |
| 38,944 | - | Atu0035 | 0.84 | +0.6 | |
| 39,085 | - | -0.2 | |||
| 39,133 | + | -1.7 | |||
| 39,153 | - | +2.1 | |||
| 39,302 | + | +0.1 | |||
| 39,364 | - | +1.3 | |||
| 39,569 | + | Atu0036 | 0.56 | -0.7 | |
| 39,585 | - | Atu0036 | 0.59 | -1.7 | |
| 39,642 | + | Atu0036 | 0.72 | -0.1 | |
| 40,759 | - | +0.3 |
Or see this region's nucleotide sequence