Strain Fitness in Agrobacterium fabrum C58 around Atu0010

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0009 and Atu0010 overlap by 4 nucleotidesAtu0010 and Atu0011 overlap by 4 nucleotidesAtu0011 and Atu0012 are separated by 158 nucleotides Atu0009: Atu0009 - membrane-bound lytic murein transglycosylase, at 5,865 to 6,977 Atu0009 Atu0010: Atu0010 - hypothetical protein, at 6,974 to 7,543 Atu0010 Atu0011: Atu0011 - transcriptional regulator, at 7,540 to 7,905 Atu0011 Atu0012: Atu0012 - DNA gyrase subunit B, at 8,064 to 10,499 Atu0012 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1 2 3at 5.990 kb on - strand, within Atu0009at 6.003 kb on + strand, within Atu0009at 6.055 kb on - strand, within Atu0009at 6.098 kb on + strand, within Atu0009at 6.165 kb on - strand, within Atu0009at 6.172 kb on + strand, within Atu0009at 6.224 kb on - strand, within Atu0009at 6.289 kb on - strand, within Atu0009at 6.289 kb on - strand, within Atu0009at 6.435 kb on + strand, within Atu0009at 6.435 kb on + strand, within Atu0009at 6.527 kb on - strand, within Atu0009at 6.538 kb on - strand, within Atu0009at 6.660 kb on + strand, within Atu0009at 6.710 kb on - strand, within Atu0009at 6.742 kb on + strand, within Atu0009at 6.801 kb on - strand, within Atu0009at 6.827 kb on + strand, within Atu0009at 6.920 kb on - strandat 7.026 kb on - strandat 7.098 kb on + strand, within Atu0010at 7.148 kb on + strand, within Atu0010at 7.200 kb on + strand, within Atu0010at 7.200 kb on - strand, within Atu0010at 7.208 kb on - strand, within Atu0010at 7.228 kb on + strand, within Atu0010at 7.271 kb on + strand, within Atu0010at 7.334 kb on + strand, within Atu0010at 7.363 kb on - strand, within Atu0010at 7.378 kb on - strand, within Atu0010at 7.378 kb on - strand, within Atu0010at 7.378 kb on - strand, within Atu0010at 7.378 kb on - strand, within Atu0010at 7.405 kb on + strand, within Atu0010at 7.410 kb on + strand, within Atu0010at 7.423 kb on - strand, within Atu0010at 7.761 kb on + strand, within Atu0011at 7.800 kb on + strand, within Atu0011at 7.812 kb on + strand, within Atu0011at 7.866 kb on + strand, within Atu0011at 7.910 kb on + strandat 7.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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5,990 - Atu0009 0.11 +1.1
6,003 + Atu0009 0.12 -0.1
6,055 - Atu0009 0.17 +1.0
6,098 + Atu0009 0.21 +2.1
6,165 - Atu0009 0.27 -0.7
6,172 + Atu0009 0.28 +1.3
6,224 - Atu0009 0.32 +1.3
6,289 - Atu0009 0.38 +1.6
6,289 - Atu0009 0.38 +0.9
6,435 + Atu0009 0.51 +0.7
6,435 + Atu0009 0.51 +0.9
6,527 - Atu0009 0.59 +1.3
6,538 - Atu0009 0.60 +1.5
6,660 + Atu0009 0.71 +0.9
6,710 - Atu0009 0.76 +0.7
6,742 + Atu0009 0.79 -0.7
6,801 - Atu0009 0.84 +1.7
6,827 + Atu0009 0.86 -1.4
6,920 - -0.9
7,026 - +2.5
7,098 + Atu0010 0.22 +0.8
7,148 + Atu0010 0.31 +1.2
7,200 + Atu0010 0.40 +3.6
7,200 - Atu0010 0.40 +2.7
7,208 - Atu0010 0.41 +0.3
7,228 + Atu0010 0.45 +1.3
7,271 + Atu0010 0.52 +0.6
7,334 + Atu0010 0.63 +2.0
7,363 - Atu0010 0.68 +1.4
7,378 - Atu0010 0.71 +1.3
7,378 - Atu0010 0.71 +1.2
7,378 - Atu0010 0.71 +1.6
7,378 - Atu0010 0.71 +0.8
7,405 + Atu0010 0.76 -0.1
7,410 + Atu0010 0.76 +0.9
7,423 - Atu0010 0.79 -1.0
7,761 + Atu0011 0.60 +0.5
7,800 + Atu0011 0.71 +0.5
7,812 + Atu0011 0.74 +0.7
7,866 + Atu0011 0.89 +0.1
7,910 + +0.4
7,922 + -0.1

Or see this region's nucleotide sequence