Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0510 and Atu0511 overlap by 1 nucleotides Atu0511 and Atu8131 overlap by 1 nucleotides Atu8131 and Atu0513 are separated by 105 nucleotides Atu0513 and Atu0514 are separated by 404 nucleotides
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Atu0511: Atu0511 - pH adaption potassium efflux system protein, at 499,889 to 500,224
Atu0511
Atu8131: Atu8131 - pH adaption potassium efflux system protein, at 500,224 to 503,142
Atu8131
Atu0513: Atu0513 - hypothetical protein, at 503,248 to 503,625
Atu0513
Atu0514: Atu0514 - methyl-accepting chemotaxis protein, at 504,030 to 505,736
Atu0514
Position (kb) 500
501
502
503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 499.255 kb on + strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.277 kb on + strand, within Atu0510 at 499.288 kb on + strand, within Atu0510 at 499.296 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.322 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.371 kb on + strand, within Atu0510 at 499.377 kb on - strand, within Atu0510 at 499.615 kb on - strand, within Atu0510 at 499.652 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.761 kb on + strand at 499.924 kb on + strand, within Atu0511 at 499.928 kb on - strand, within Atu0511 at 499.932 kb on - strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.966 kb on - strand, within Atu0511 at 500.014 kb on + strand, within Atu0511 at 500.029 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.151 kb on - strand, within Atu0511 at 500.444 kb on - strand at 500.470 kb on - strand at 500.514 kb on + strand at 500.626 kb on + strand, within Atu8131 at 500.705 kb on + strand, within Atu8131 at 500.814 kb on - strand, within Atu8131 at 500.838 kb on - strand, within Atu8131 at 501.011 kb on - strand, within Atu8131 at 501.025 kb on + strand, within Atu8131 at 501.045 kb on - strand, within Atu8131 at 501.103 kb on + strand, within Atu8131 at 501.483 kb on + strand, within Atu8131 at 501.569 kb on - strand, within Atu8131 at 501.615 kb on + strand, within Atu8131 at 501.643 kb on + strand, within Atu8131 at 501.651 kb on - strand, within Atu8131 at 501.675 kb on + strand, within Atu8131 at 501.675 kb on + strand, within Atu8131 at 501.675 kb on + strand, within Atu8131 at 501.709 kb on + strand, within Atu8131 at 501.823 kb on + strand, within Atu8131 at 501.933 kb on - strand, within Atu8131 at 501.933 kb on - strand, within Atu8131 at 502.033 kb on + strand, within Atu8131 at 502.126 kb on - strand, within Atu8131 at 502.228 kb on + strand, within Atu8131 at 502.343 kb on + strand, within Atu8131 at 502.343 kb on + strand, within Atu8131 at 502.343 kb on + strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.474 kb on - strand, within Atu8131 at 502.588 kb on + strand, within Atu8131 at 502.633 kb on + strand, within Atu8131 at 502.750 kb on + strand, within Atu8131 at 502.837 kb on - strand, within Atu8131 at 502.841 kb on + strand, within Atu8131 at 502.868 kb on - strand at 502.868 kb on - strand at 502.868 kb on - strand at 502.868 kb on - strand at 503.019 kb on - strand at 503.049 kb on - strand at 503.079 kb on - strand at 503.165 kb on + strand at 503.194 kb on - strand at 503.260 kb on + strand at 503.285 kb on - strand at 503.382 kb on - strand, within Atu0513 at 503.420 kb on + strand, within Atu0513 at 503.420 kb on + strand, within Atu0513 at 503.437 kb on + strand, within Atu0513 at 503.465 kb on - strand, within Atu0513 at 503.465 kb on - strand, within Atu0513 at 503.478 kb on - strand, within Atu0513 at 503.507 kb on + strand, within Atu0513 at 503.507 kb on + strand, within Atu0513 at 503.515 kb on - strand, within Atu0513 at 503.663 kb on + strand at 503.671 kb on - strand at 503.671 kb on - strand at 503.671 kb on - strand at 503.671 kb on - strand at 503.722 kb on + strand at 503.730 kb on - strand at 503.730 kb on - strand at 503.952 kb on + strand at 503.958 kb on - strand at 503.997 kb on + strand at 504.015 kb on + strand at 504.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 499,255 + Atu0510 0.61 +0.5 499,255 + Atu0510 0.61 -1.3 499,277 + Atu0510 0.63 -1.1 499,288 + Atu0510 0.63 -0.6 499,296 - Atu0510 0.64 -0.8 499,320 - Atu0510 0.65 -0.5 499,320 - Atu0510 0.65 -1.3 499,322 + Atu0510 0.65 -0.2 499,369 + Atu0510 0.68 -1.4 499,369 + Atu0510 0.68 +0.1 499,371 + Atu0510 0.68 +0.6 499,377 - Atu0510 0.69 -1.2 499,615 - Atu0510 0.83 -0.3 499,652 - Atu0510 0.86 -0.7 499,681 - Atu0510 0.87 -1.8 499,681 - Atu0510 0.87 -2.5 499,761 + -0.3 499,924 + Atu0511 0.10 -0.5 499,928 - Atu0511 0.12 +0.3 499,932 - Atu0511 0.13 -1.1 499,953 + Atu0511 0.19 -0.4 499,953 + Atu0511 0.19 +1.3 499,961 - Atu0511 0.21 +1.9 499,961 - Atu0511 0.21 +2.1 499,966 - Atu0511 0.23 -0.1 500,014 + Atu0511 0.37 -0.8 500,029 + Atu0511 0.42 -0.8 500,112 + Atu0511 0.66 -0.8 500,112 + Atu0511 0.66 -0.8 500,151 - Atu0511 0.78 -1.2 500,444 - -2.6 500,470 - -1.2 500,514 + -0.9 500,626 + Atu8131 0.14 -2.4 500,705 + Atu8131 0.16 -0.5 500,814 - Atu8131 0.20 -0.5 500,838 - Atu8131 0.21 -0.5 501,011 - Atu8131 0.27 -1.9 501,025 + Atu8131 0.27 -1.8 501,045 - Atu8131 0.28 -1.1 501,103 + Atu8131 0.30 -0.7 501,483 + Atu8131 0.43 -2.3 501,569 - Atu8131 0.46 -0.1 501,615 + Atu8131 0.48 -1.3 501,643 + Atu8131 0.49 -1.6 501,651 - Atu8131 0.49 -1.5 501,675 + Atu8131 0.50 -3.8 501,675 + Atu8131 0.50 -2.0 501,675 + Atu8131 0.50 -2.3 501,709 + Atu8131 0.51 -0.8 501,823 + Atu8131 0.55 -1.1 501,933 - Atu8131 0.59 -1.5 501,933 - Atu8131 0.59 +2.8 502,033 + Atu8131 0.62 +1.5 502,126 - Atu8131 0.65 -2.9 502,228 + Atu8131 0.69 -0.8 502,343 + Atu8131 0.73 -2.7 502,343 + Atu8131 0.73 -1.4 502,343 + Atu8131 0.73 -3.8 502,351 - Atu8131 0.73 -2.0 502,351 - Atu8131 0.73 -2.0 502,351 - Atu8131 0.73 -3.7 502,351 - Atu8131 0.73 -0.8 502,351 - Atu8131 0.73 -0.5 502,474 - Atu8131 0.77 -1.7 502,588 + Atu8131 0.81 -0.9 502,633 + Atu8131 0.83 -1.5 502,750 + Atu8131 0.87 -2.5 502,837 - Atu8131 0.90 -2.1 502,841 + Atu8131 0.90 +0.3 502,868 - -0.7 502,868 - +0.1 502,868 - -0.9 502,868 - -1.7 503,019 - -0.1 503,049 - +1.5 503,079 - -1.8 503,165 + -1.8 503,194 - -0.4 503,260 + -1.5 503,285 - -0.1 503,382 - Atu0513 0.35 -0.5 503,420 + Atu0513 0.46 -2.5 503,420 + Atu0513 0.46 -0.3 503,437 + Atu0513 0.50 +1.0 503,465 - Atu0513 0.57 -1.8 503,465 - Atu0513 0.57 -2.1 503,478 - Atu0513 0.61 +0.3 503,507 + Atu0513 0.69 -0.9 503,507 + Atu0513 0.69 -1.0 503,515 - Atu0513 0.71 -0.1 503,663 + -0.7 503,671 - +1.5 503,671 - -0.6 503,671 - -3.8 503,671 - -1.5 503,722 + -2.1 503,730 - -1.2 503,730 - -1.1 503,952 + +2.3 503,958 - +0.1 503,997 + +1.0 504,015 + +0.3 504,123 - -0.6
Or see this region's nucleotide sequence