Strain Fitness in Agrobacterium fabrum C58 around Atu5516

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5514 and Atu5515 are separated by 218 nucleotidesAtu5515 and Atu5516 overlap by 4 nucleotidesAtu5516 and Atu5517 are separated by 367 nucleotidesAtu5517 and Atu5518 are separated by 35 nucleotides Atu5514: Atu5514 - DnaJ family molecular chaperone, at 506,593 to 507,198 Atu5514 Atu5515: Atu5515 - hypothetical protein, at 507,417 to 507,599 Atu5515 Atu5516: Atu5516 - hypothetical protein, at 507,596 to 508,975 Atu5516 Atu5517: Atu5517 - hypothetical protein, at 509,343 to 509,603 Atu5517 Atu5518: Atu5518 - hypothetical protein, at 509,639 to 511,147 Atu5518 Position (kb) 507 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 506.669 kb on - strand, within Atu5514at 506.698 kb on - strand, within Atu5514at 506.724 kb on - strand, within Atu5514at 506.749 kb on - strand, within Atu5514at 506.749 kb on - strand, within Atu5514at 506.759 kb on + strand, within Atu5514at 506.767 kb on - strand, within Atu5514at 506.776 kb on + strand, within Atu5514at 506.784 kb on - strand, within Atu5514at 506.788 kb on + strand, within Atu5514at 506.833 kb on + strand, within Atu5514at 506.956 kb on + strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.979 kb on + strand, within Atu5514at 506.981 kb on - strand, within Atu5514at 506.984 kb on + strand, within Atu5514at 507.023 kb on - strand, within Atu5514at 507.040 kb on - strand, within Atu5514at 507.041 kb on - strand, within Atu5514at 507.077 kb on + strand, within Atu5514at 507.173 kb on + strandat 507.303 kb on - strandat 507.358 kb on + strandat 507.394 kb on - strandat 507.410 kb on + strandat 507.447 kb on + strand, within Atu5515at 507.447 kb on + strand, within Atu5515at 507.447 kb on + strand, within Atu5515at 507.447 kb on + strand, within Atu5515at 507.455 kb on - strand, within Atu5515at 507.455 kb on - strand, within Atu5515at 507.569 kb on - strand, within Atu5515at 507.571 kb on + strand, within Atu5515at 507.580 kb on - strand, within Atu5515at 507.607 kb on + strandat 507.627 kb on - strandat 507.627 kb on - strandat 507.712 kb on + strandat 507.769 kb on + strand, within Atu5516at 507.777 kb on - strand, within Atu5516at 507.777 kb on - strand, within Atu5516at 507.777 kb on - strand, within Atu5516at 507.785 kb on - strand, within Atu5516at 507.832 kb on + strand, within Atu5516at 507.852 kb on + strand, within Atu5516at 507.862 kb on + strand, within Atu5516at 507.864 kb on + strand, within Atu5516at 507.904 kb on - strand, within Atu5516at 507.904 kb on - strand, within Atu5516at 507.975 kb on + strand, within Atu5516at 508.064 kb on - strand, within Atu5516at 508.068 kb on - strand, within Atu5516at 508.082 kb on - strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.146 kb on - strand, within Atu5516at 508.156 kb on + strand, within Atu5516at 508.182 kb on + strand, within Atu5516at 508.182 kb on + strand, within Atu5516at 508.182 kb on + strand, within Atu5516at 508.190 kb on - strand, within Atu5516at 508.190 kb on - strand, within Atu5516at 508.203 kb on + strand, within Atu5516at 508.257 kb on + strand, within Atu5516at 508.333 kb on + strand, within Atu5516at 508.390 kb on - strand, within Atu5516at 508.392 kb on + strand, within Atu5516at 508.423 kb on - strand, within Atu5516at 508.505 kb on + strand, within Atu5516at 508.533 kb on + strand, within Atu5516at 508.548 kb on + strand, within Atu5516at 508.556 kb on - strand, within Atu5516at 508.556 kb on - strand, within Atu5516at 508.603 kb on + strand, within Atu5516at 508.608 kb on + strand, within Atu5516at 508.608 kb on + strand, within Atu5516at 508.608 kb on + strand, within Atu5516at 508.611 kb on - strand, within Atu5516at 508.616 kb on - strand, within Atu5516at 508.616 kb on - strand, within Atu5516at 508.616 kb on - strand, within Atu5516at 508.641 kb on - strand, within Atu5516at 508.647 kb on + strand, within Atu5516at 508.720 kb on + strand, within Atu5516at 508.758 kb on + strand, within Atu5516at 508.813 kb on + strand, within Atu5516at 508.831 kb on - strand, within Atu5516at 508.886 kb on + strandat 509.034 kb on + strandat 509.184 kb on + strandat 509.204 kb on + strandat 509.241 kb on + strandat 509.321 kb on - strandat 509.341 kb on + strandat 509.356 kb on - strandat 509.396 kb on + strand, within Atu5517at 509.529 kb on + strand, within Atu5517at 509.552 kb on + strand, within Atu5517at 509.562 kb on - strand, within Atu5517at 509.591 kb on + strandat 509.591 kb on + strandat 509.591 kb on + strandat 509.599 kb on - strandat 509.599 kb on - strandat 509.599 kb on - strandat 509.599 kb on - strandat 509.712 kb on + strandat 509.733 kb on + strandat 509.812 kb on + strand, within Atu5518at 509.815 kb on + strand, within Atu5518at 509.815 kb on + strand, within Atu5518at 509.823 kb on - strand, within Atu5518at 509.854 kb on + strand, within Atu5518at 509.870 kb on + strand, within Atu5518at 509.939 kb on - strand, within Atu5518

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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506,669 - Atu5514 0.13 -0.6
506,698 - Atu5514 0.17 -1.8
506,724 - Atu5514 0.22 +0.6
506,749 - Atu5514 0.26 +2.6
506,749 - Atu5514 0.26 -0.2
506,759 + Atu5514 0.27 +0.0
506,767 - Atu5514 0.29 +0.7
506,776 + Atu5514 0.30 +1.7
506,784 - Atu5514 0.32 +1.0
506,788 + Atu5514 0.32 +0.3
506,833 + Atu5514 0.40 +0.0
506,956 + Atu5514 0.60 -0.3
506,971 - Atu5514 0.62 +0.2
506,971 - Atu5514 0.62 -1.1
506,971 - Atu5514 0.62 +1.4
506,971 - Atu5514 0.62 +0.6
506,979 + Atu5514 0.64 +0.4
506,981 - Atu5514 0.64 -1.0
506,984 + Atu5514 0.65 +0.0
507,023 - Atu5514 0.71 +0.1
507,040 - Atu5514 0.74 -0.2
507,041 - Atu5514 0.74 +2.2
507,077 + Atu5514 0.80 -1.2
507,173 + -0.2
507,303 - +0.7
507,358 + -0.6
507,394 - -1.4
507,410 + +1.0
507,447 + Atu5515 0.16 +0.2
507,447 + Atu5515 0.16 -2.4
507,447 + Atu5515 0.16 -1.6
507,447 + Atu5515 0.16 -2.4
507,455 - Atu5515 0.21 +0.0
507,455 - Atu5515 0.21 -2.4
507,569 - Atu5515 0.83 +0.9
507,571 + Atu5515 0.84 +0.3
507,580 - Atu5515 0.89 -0.1
507,607 + -0.1
507,627 - +0.6
507,627 - +1.0
507,712 + -0.2
507,769 + Atu5516 0.13 -0.8
507,777 - Atu5516 0.13 +1.6
507,777 - Atu5516 0.13 -2.1
507,777 - Atu5516 0.13 -0.6
507,785 - Atu5516 0.14 -1.4
507,832 + Atu5516 0.17 -1.0
507,852 + Atu5516 0.19 +0.0
507,862 + Atu5516 0.19 -0.0
507,864 + Atu5516 0.19 +1.0
507,904 - Atu5516 0.22 -0.5
507,904 - Atu5516 0.22 -0.8
507,975 + Atu5516 0.27 +0.6
508,064 - Atu5516 0.34 +0.1
508,068 - Atu5516 0.34 -1.3
508,082 - Atu5516 0.35 +0.8
508,115 + Atu5516 0.38 -1.0
508,115 + Atu5516 0.38 -1.8
508,115 + Atu5516 0.38 -1.6
508,115 + Atu5516 0.38 -2.7
508,115 + Atu5516 0.38 -1.4
508,115 + Atu5516 0.38 -0.3
508,115 + Atu5516 0.38 -1.0
508,115 + Atu5516 0.38 +0.3
508,115 + Atu5516 0.38 -0.7
508,115 + Atu5516 0.38 -0.7
508,115 + Atu5516 0.38 -1.2
508,115 + Atu5516 0.38 -1.2
508,123 - Atu5516 0.38 -2.2
508,123 - Atu5516 0.38 -3.2
508,123 - Atu5516 0.38 -2.7
508,123 - Atu5516 0.38 +0.0
508,123 - Atu5516 0.38 -0.7
508,123 - Atu5516 0.38 +0.0
508,123 - Atu5516 0.38 -0.7
508,123 - Atu5516 0.38 +0.0
508,123 - Atu5516 0.38 -1.0
508,123 - Atu5516 0.38 -0.6
508,123 - Atu5516 0.38 +0.8
508,123 - Atu5516 0.38 -1.6
508,123 - Atu5516 0.38 -0.8
508,123 - Atu5516 0.38 -0.7
508,146 - Atu5516 0.40 -0.7
508,156 + Atu5516 0.41 -1.2
508,182 + Atu5516 0.42 -0.2
508,182 + Atu5516 0.42 -0.7
508,182 + Atu5516 0.42 -1.1
508,190 - Atu5516 0.43 -0.2
508,190 - Atu5516 0.43 -1.5
508,203 + Atu5516 0.44 -1.4
508,257 + Atu5516 0.48 +2.9
508,333 + Atu5516 0.53 -0.6
508,390 - Atu5516 0.58 +1.4
508,392 + Atu5516 0.58 -0.4
508,423 - Atu5516 0.60 -0.7
508,505 + Atu5516 0.66 -2.4
508,533 + Atu5516 0.68 -0.4
508,548 + Atu5516 0.69 +2.9
508,556 - Atu5516 0.70 -0.9
508,556 - Atu5516 0.70 -0.5
508,603 + Atu5516 0.73 -2.1
508,608 + Atu5516 0.73 -1.4
508,608 + Atu5516 0.73 -1.6
508,608 + Atu5516 0.73 -1.8
508,611 - Atu5516 0.74 -2.0
508,616 - Atu5516 0.74 +0.5
508,616 - Atu5516 0.74 -2.1
508,616 - Atu5516 0.74 -2.5
508,641 - Atu5516 0.76 -0.3
508,647 + Atu5516 0.76 -1.4
508,720 + Atu5516 0.81 -0.8
508,758 + Atu5516 0.84 +2.6
508,813 + Atu5516 0.88 -1.8
508,831 - Atu5516 0.89 -0.8
508,886 + -0.7
509,034 + -0.7
509,184 + +0.4
509,204 + +0.2
509,241 + -1.6
509,321 - -0.1
509,341 + -1.0
509,356 - -0.2
509,396 + Atu5517 0.20 -0.5
509,529 + Atu5517 0.71 -0.4
509,552 + Atu5517 0.80 -0.9
509,562 - Atu5517 0.84 +1.1
509,591 + +0.1
509,591 + +2.0
509,591 + +0.3
509,599 - -0.1
509,599 - -0.2
509,599 - -0.3
509,599 - -2.3
509,712 + +0.4
509,733 + +1.1
509,812 + Atu5518 0.11 +1.8
509,815 + Atu5518 0.12 -1.1
509,815 + Atu5518 0.12 +1.6
509,823 - Atu5518 0.12 +0.1
509,854 + Atu5518 0.14 +2.0
509,870 + Atu5518 0.15 -0.7
509,939 - Atu5518 0.20 +0.8

Or see this region's nucleotide sequence