Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5483 and Atu5484 are separated by 73 nucleotides Atu5484 and Atu5485 are separated by 416 nucleotides Atu5485 and Atu5486 are separated by 31 nucleotides
Atu5483: Atu5483 - GntR family transcriptional regulator, at 474,855 to 475,853
Atu5483
Atu5484: Atu5484 - hypothetical protein, at 475,927 to 476,673
Atu5484
Atu5485: Atu5485 - hypothetical protein, at 477,090 to 477,392
Atu5485
Atu5486: Atu5486 - hypothetical protein, at 477,424 to 477,768
Atu5486
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 475.039 kb on + strand, within Atu5483 at 475.056 kb on + strand, within Atu5483 at 475.066 kb on + strand, within Atu5483 at 475.080 kb on - strand, within Atu5483 at 475.098 kb on - strand, within Atu5483 at 475.104 kb on + strand, within Atu5483 at 475.112 kb on - strand, within Atu5483 at 475.180 kb on + strand, within Atu5483 at 475.289 kb on + strand, within Atu5483 at 475.352 kb on + strand, within Atu5483 at 475.367 kb on + strand, within Atu5483 at 475.455 kb on + strand, within Atu5483 at 475.456 kb on + strand, within Atu5483 at 475.456 kb on - strand, within Atu5483 at 475.494 kb on - strand, within Atu5483 at 475.774 kb on + strand at 475.774 kb on + strand at 475.782 kb on - strand at 475.782 kb on - strand at 475.782 kb on - strand at 475.840 kb on - strand at 475.856 kb on + strand at 475.899 kb on + strand at 475.899 kb on + strand at 475.899 kb on + strand at 475.899 kb on + strand at 475.907 kb on - strand at 475.931 kb on + strand at 476.017 kb on + strand, within Atu5484 at 476.019 kb on - strand, within Atu5484 at 476.180 kb on - strand, within Atu5484 at 476.185 kb on + strand, within Atu5484 at 476.200 kb on + strand, within Atu5484 at 476.298 kb on + strand, within Atu5484 at 476.322 kb on - strand, within Atu5484 at 476.359 kb on - strand, within Atu5484 at 476.383 kb on + strand, within Atu5484 at 476.383 kb on - strand, within Atu5484 at 476.386 kb on - strand, within Atu5484 at 476.424 kb on - strand, within Atu5484 at 476.424 kb on - strand, within Atu5484 at 476.425 kb on + strand, within Atu5484 at 476.435 kb on + strand, within Atu5484 at 476.435 kb on + strand, within Atu5484 at 476.442 kb on + strand, within Atu5484 at 476.443 kb on - strand, within Atu5484 at 476.447 kb on + strand, within Atu5484 at 476.447 kb on + strand, within Atu5484 at 476.452 kb on + strand, within Atu5484 at 476.464 kb on + strand, within Atu5484 at 476.470 kb on - strand, within Atu5484 at 476.544 kb on + strand, within Atu5484 at 476.552 kb on - strand, within Atu5484 at 476.585 kb on + strand, within Atu5484 at 476.722 kb on + strand at 476.730 kb on - strand at 476.755 kb on + strand at 476.845 kb on + strand at 476.858 kb on - strand at 476.860 kb on - strand at 476.871 kb on + strand at 476.879 kb on - strand at 476.953 kb on + strand at 476.965 kb on + strand at 476.966 kb on - strand at 476.975 kb on + strand at 476.999 kb on + strand at 477.010 kb on + strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.062 kb on - strand at 477.113 kb on + strand at 477.139 kb on + strand, within Atu5485 at 477.255 kb on - strand, within Atu5485 at 477.272 kb on - strand, within Atu5485 at 477.289 kb on + strand, within Atu5485 at 477.289 kb on + strand, within Atu5485 at 477.421 kb on + strand at 477.426 kb on + strand at 477.457 kb on - strand at 477.457 kb on - strand at 477.529 kb on + strand, within Atu5486 at 477.640 kb on + strand, within Atu5486 at 477.640 kb on + strand, within Atu5486 at 477.657 kb on + strand, within Atu5486 at 477.669 kb on + strand, within Atu5486
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 475,039 + Atu5483 0.18 -0.1 475,056 + Atu5483 0.20 -0.7 475,066 + Atu5483 0.21 -0.5 475,080 - Atu5483 0.23 +0.9 475,098 - Atu5483 0.24 -0.3 475,104 + Atu5483 0.25 -2.1 475,112 - Atu5483 0.26 -2.0 475,180 + Atu5483 0.33 -1.0 475,289 + Atu5483 0.43 +0.9 475,352 + Atu5483 0.50 -2.1 475,367 + Atu5483 0.51 +0.3 475,455 + Atu5483 0.60 +0.0 475,456 + Atu5483 0.60 -0.5 475,456 - Atu5483 0.60 -0.2 475,494 - Atu5483 0.64 +0.2 475,774 + +0.4 475,774 + -0.4 475,782 - +2.7 475,782 - +2.0 475,782 - +2.2 475,840 - -1.6 475,856 + +0.7 475,899 + -0.7 475,899 + +0.0 475,899 + +0.3 475,899 + +0.4 475,907 - -0.8 475,931 + +1.2 476,017 + Atu5484 0.12 -1.2 476,019 - Atu5484 0.12 -0.2 476,180 - Atu5484 0.34 -0.0 476,185 + Atu5484 0.35 +1.1 476,200 + Atu5484 0.37 -0.7 476,298 + Atu5484 0.50 +0.9 476,322 - Atu5484 0.53 +1.2 476,359 - Atu5484 0.58 -1.2 476,383 + Atu5484 0.61 +1.7 476,383 - Atu5484 0.61 -1.1 476,386 - Atu5484 0.61 +0.0 476,424 - Atu5484 0.67 -0.3 476,424 - Atu5484 0.67 -2.0 476,425 + Atu5484 0.67 -1.1 476,435 + Atu5484 0.68 +1.6 476,435 + Atu5484 0.68 +0.0 476,442 + Atu5484 0.69 -2.0 476,443 - Atu5484 0.69 -0.6 476,447 + Atu5484 0.70 -1.2 476,447 + Atu5484 0.70 -0.5 476,452 + Atu5484 0.70 -2.2 476,464 + Atu5484 0.72 -2.2 476,470 - Atu5484 0.73 -1.4 476,544 + Atu5484 0.83 -1.6 476,552 - Atu5484 0.84 -0.8 476,585 + Atu5484 0.88 +1.8 476,722 + +0.3 476,730 - -3.2 476,755 + +0.4 476,845 + +0.6 476,858 - +0.3 476,860 - -1.0 476,871 + -0.7 476,879 - -0.3 476,953 + -0.8 476,965 + -0.4 476,966 - -0.9 476,975 + +0.7 476,999 + -0.3 477,010 + +0.7 477,018 - -1.6 477,018 - -1.7 477,062 - +0.0 477,113 + +0.4 477,139 + Atu5485 0.16 -1.3 477,255 - Atu5485 0.54 -0.6 477,272 - Atu5485 0.60 -1.6 477,289 + Atu5485 0.66 -1.6 477,289 + Atu5485 0.66 -0.3 477,421 + -1.0 477,426 + -0.8 477,457 - -1.6 477,457 - -1.9 477,529 + Atu5486 0.30 -0.5 477,640 + Atu5486 0.63 +0.6 477,640 + Atu5486 0.63 +0.6 477,657 + Atu5486 0.68 +0.2 477,669 + Atu5486 0.71 -0.8
Or see this region's nucleotide sequence