Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5451 and Atu5452 are separated by 295 nucleotides Atu5452 and Atu5453 overlap by 4 nucleotides Atu5453 and Atu5454 overlap by 11 nucleotides
Atu5451: Atu5451 - hypothetical protein, at 443,045 to 443,251
Atu5451
Atu5452: Atu5452 - ABC transporter nucleotide binding/ATPase, at 443,547 to 444,206
Atu5452
Atu5453: Atu5453 - ABC transporter membrane spanning protein, at 444,203 to 446,611
Atu5453
Atu5454: Atu5454 - hypothetical protein, at 446,601 to 447,665
Atu5454
Position (kb) 444
445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.254 kb on - strand at 443.427 kb on + strand at 443.446 kb on - strand at 443.455 kb on - strand at 443.460 kb on - strand at 443.519 kb on - strand at 443.553 kb on - strand at 443.617 kb on - strand, within Atu5452 at 443.690 kb on + strand, within Atu5452 at 443.700 kb on + strand, within Atu5452 at 443.707 kb on + strand, within Atu5452 at 443.715 kb on + strand, within Atu5452 at 443.717 kb on + strand, within Atu5452 at 443.728 kb on - strand, within Atu5452 at 443.776 kb on + strand, within Atu5452 at 443.784 kb on - strand, within Atu5452 at 443.794 kb on - strand, within Atu5452 at 443.953 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.244 kb on + strand at 444.279 kb on + strand at 444.356 kb on + strand at 444.356 kb on + strand at 444.364 kb on - strand at 444.418 kb on + strand at 444.432 kb on - strand at 444.450 kb on + strand, within Atu5453 at 444.458 kb on - strand, within Atu5453 at 444.479 kb on + strand, within Atu5453 at 444.479 kb on + strand, within Atu5453 at 444.648 kb on + strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.736 kb on - strand, within Atu5453 at 444.819 kb on + strand, within Atu5453 at 444.848 kb on - strand, within Atu5453 at 444.867 kb on - strand, within Atu5453 at 444.895 kb on - strand, within Atu5453 at 444.917 kb on - strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.976 kb on - strand, within Atu5453 at 444.978 kb on - strand, within Atu5453 at 444.978 kb on - strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.078 kb on + strand, within Atu5453 at 445.078 kb on + strand, within Atu5453 at 445.081 kb on - strand, within Atu5453 at 445.081 kb on - strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.093 kb on - strand, within Atu5453 at 445.093 kb on - strand, within Atu5453 at 445.100 kb on + strand, within Atu5453 at 445.190 kb on + strand, within Atu5453 at 445.215 kb on - strand, within Atu5453 at 445.251 kb on + strand, within Atu5453 at 445.254 kb on - strand, within Atu5453 at 445.282 kb on - strand, within Atu5453 at 445.285 kb on + strand, within Atu5453 at 445.289 kb on - strand, within Atu5453 at 445.290 kb on + strand, within Atu5453 at 445.293 kb on + strand, within Atu5453 at 445.463 kb on - strand, within Atu5453 at 445.470 kb on + strand, within Atu5453 at 445.470 kb on - strand, within Atu5453 at 445.604 kb on - strand, within Atu5453 at 445.668 kb on - strand, within Atu5453 at 445.692 kb on - strand, within Atu5453 at 445.700 kb on - strand, within Atu5453 at 445.897 kb on + strand, within Atu5453 at 445.905 kb on - strand, within Atu5453 at 445.905 kb on - strand, within Atu5453 at 446.059 kb on + strand, within Atu5453 at 446.061 kb on + strand, within Atu5453 at 446.204 kb on - strand, within Atu5453 at 446.206 kb on + strand, within Atu5453 at 446.218 kb on + strand, within Atu5453 at 446.352 kb on - strand, within Atu5453 at 446.406 kb on + strand at 446.411 kb on + strand at 446.416 kb on + strand at 446.416 kb on + strand at 446.416 kb on + strand at 446.424 kb on - strand at 446.424 kb on - strand at 446.437 kb on + strand at 446.584 kb on + strand at 446.592 kb on - strand at 446.625 kb on - strand at 446.669 kb on + strand at 446.708 kb on - strand, within Atu5454 at 446.780 kb on - strand, within Atu5454 at 446.804 kb on - strand, within Atu5454 at 446.894 kb on + strand, within Atu5454 at 446.904 kb on + strand, within Atu5454 at 446.941 kb on - strand, within Atu5454 at 446.958 kb on - strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 447.037 kb on + strand, within Atu5454 at 447.068 kb on - strand, within Atu5454 at 447.084 kb on + strand, within Atu5454 at 447.119 kb on - strand, within Atu5454 at 447.128 kb on + strand, within Atu5454 at 447.271 kb on - strand, within Atu5454 at 447.286 kb on - strand, within Atu5454 at 447.314 kb on - strand, within Atu5454 at 447.333 kb on - strand, within Atu5454 at 447.381 kb on + strand, within Atu5454 at 447.488 kb on - strand, within Atu5454 at 447.501 kb on - strand, within Atu5454 at 447.569 kb on + strand at 447.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 443,254 - -0.3 443,427 + -1.6 443,446 - -0.4 443,455 - +0.4 443,460 - +1.6 443,519 - -0.4 443,553 - +0.5 443,617 - Atu5452 0.11 -2.1 443,690 + Atu5452 0.22 -0.8 443,700 + Atu5452 0.23 +0.0 443,707 + Atu5452 0.24 +0.0 443,715 + Atu5452 0.25 +1.6 443,717 + Atu5452 0.26 +1.1 443,728 - Atu5452 0.27 +0.0 443,776 + Atu5452 0.35 -2.8 443,784 - Atu5452 0.36 -0.8 443,794 - Atu5452 0.37 -0.7 443,953 + Atu5452 0.62 +1.8 444,021 + Atu5452 0.72 +0.1 444,021 + Atu5452 0.72 -1.0 444,021 + Atu5452 0.72 -0.1 444,244 + +0.4 444,279 + +0.1 444,356 + -0.4 444,356 + +0.3 444,364 - +1.6 444,418 + +0.8 444,432 - -1.3 444,450 + Atu5453 0.10 -0.7 444,458 - Atu5453 0.11 -0.1 444,479 + Atu5453 0.11 -0.7 444,479 + Atu5453 0.11 -0.6 444,648 + Atu5453 0.18 -0.0 444,656 - Atu5453 0.19 -1.0 444,656 - Atu5453 0.19 +0.2 444,656 - Atu5453 0.19 -0.5 444,656 - Atu5453 0.19 -1.3 444,736 - Atu5453 0.22 -1.0 444,819 + Atu5453 0.26 -0.8 444,848 - Atu5453 0.27 -1.6 444,867 - Atu5453 0.28 +0.3 444,895 - Atu5453 0.29 +0.4 444,917 - Atu5453 0.30 +1.3 444,970 + Atu5453 0.32 -1.6 444,970 + Atu5453 0.32 -0.4 444,970 + Atu5453 0.32 -1.7 444,970 + Atu5453 0.32 -2.3 444,976 - Atu5453 0.32 +1.2 444,978 - Atu5453 0.32 +0.6 444,978 - Atu5453 0.32 -0.4 445,073 + Atu5453 0.36 +0.2 445,073 + Atu5453 0.36 -1.4 445,073 + Atu5453 0.36 -0.8 445,073 + Atu5453 0.36 +0.9 445,073 + Atu5453 0.36 -1.6 445,078 + Atu5453 0.36 -1.6 445,078 + Atu5453 0.36 +0.7 445,081 - Atu5453 0.36 +0.5 445,081 - Atu5453 0.36 -0.8 445,085 + Atu5453 0.37 -0.0 445,085 + Atu5453 0.37 -0.6 445,085 + Atu5453 0.37 -0.2 445,093 - Atu5453 0.37 -2.6 445,093 - Atu5453 0.37 +0.5 445,100 + Atu5453 0.37 +0.9 445,190 + Atu5453 0.41 -1.2 445,215 - Atu5453 0.42 -0.6 445,251 + Atu5453 0.44 -0.1 445,254 - Atu5453 0.44 -0.3 445,282 - Atu5453 0.45 -0.0 445,285 + Atu5453 0.45 -0.2 445,289 - Atu5453 0.45 +0.0 445,290 + Atu5453 0.45 -0.7 445,293 + Atu5453 0.45 -0.9 445,463 - Atu5453 0.52 -0.3 445,470 + Atu5453 0.53 -1.6 445,470 - Atu5453 0.53 -0.2 445,604 - Atu5453 0.58 +1.0 445,668 - Atu5453 0.61 -1.5 445,692 - Atu5453 0.62 -1.0 445,700 - Atu5453 0.62 +0.6 445,897 + Atu5453 0.70 +0.0 445,905 - Atu5453 0.71 -0.2 445,905 - Atu5453 0.71 +1.4 446,059 + Atu5453 0.77 +0.0 446,061 + Atu5453 0.77 -2.8 446,204 - Atu5453 0.83 -0.6 446,206 + Atu5453 0.83 -0.1 446,218 + Atu5453 0.84 -0.9 446,352 - Atu5453 0.89 -0.1 446,406 + +0.0 446,411 + +0.6 446,416 + -0.2 446,416 + -1.6 446,416 + -0.8 446,424 - -0.0 446,424 - +0.2 446,437 + +0.1 446,584 + -2.2 446,592 - -1.4 446,625 - -1.6 446,669 + -0.1 446,708 - Atu5454 0.10 -3.5 446,780 - Atu5454 0.17 +0.6 446,804 - Atu5454 0.19 -1.0 446,894 + Atu5454 0.28 -1.0 446,904 + Atu5454 0.28 +0.3 446,941 - Atu5454 0.32 -0.3 446,958 - Atu5454 0.34 +0.1 446,965 + Atu5454 0.34 -0.1 446,965 + Atu5454 0.34 +1.5 446,965 + Atu5454 0.34 -0.4 447,037 + Atu5454 0.41 -1.6 447,068 - Atu5454 0.44 -1.2 447,084 + Atu5454 0.45 -0.4 447,119 - Atu5454 0.49 -2.7 447,128 + Atu5454 0.49 +0.7 447,271 - Atu5454 0.63 -0.7 447,286 - Atu5454 0.64 +0.4 447,314 - Atu5454 0.67 +0.6 447,333 - Atu5454 0.69 -1.5 447,381 + Atu5454 0.73 -0.0 447,488 - Atu5454 0.83 -0.8 447,501 - Atu5454 0.85 +0.0 447,569 + -0.6 447,603 - -0.7
Or see this region's nucleotide sequence